Repbase Reports |
|---|
| 2003, Volume 3, Issue 7 |
| July 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 134 |
Harbinger1_TP |
|||
|---|---|---|---|
Harbinger1_TP is an autonomous DNA transposon - a consensus sequence. |
|||
|
Submitted: 31-Jul-2003 |
Accepted: 31-Jul-2003 |
||
|
Key Words: DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; Harbinger1_TP |
|||
|
Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Harbinger1_TP, a family of autonomous Harbinger-like DNA transposons from diatom Thalassiosira pseudonana. |
|||
|
Journal: Repbase Reports 3:(7) p. 134 (2003) |
|||
Abstract: Harbinger1_TP copies are ~95% identical to the consensus sequence, they are flanked by the TAA 3-bp target site duplications. This transposon has 43-bp terminal inverted repeats (1 mismatch). Harbinger1_TP encodes the 520-aa Harbinger1_TP1p transposase (pos. 143-1702) and the 492-aa Harbinger1_TP2p DNA binding protein (pos. 3446-1991). Harbinger1_TP1p: MALLNGLMEADVSPIHISRRRPIKDQSHQQPSFGDYFYAMTMSSNHSKRRDKYEQYLADEDEFDLHERAK RRRILIGYASAIATIATTSVQSTSGKALSIHRGRVPGAKTIKRERLDVAQSCHDMNDRHFRRRYRMDKES FWILLDIIEPHLPSTGESRVRGSICSIPNGPITHTARLSMALRIAAGGDPLDIAVNHGVSDAEPTESFWL VVDAVHKSFQLDINFPTSHEAQYELAQEFRSKSTIGITNCVGAIDGILMWIHKPTDQDCDVLGFRQTKFF CGRKKKFGLNMQAVCDARRRFLWVELRYPGSTSDFFAFDQSSLKCQLERAGFLREGLCLFGDAAYANSSY MCVPFRSATGTHDHFNFFQSQLRINIECAFGMLVHRFGMLRKAWPVNVSIAKTNSAILALCKLHNFCIES NSGNDISTADVGDSSHIMMDGGMLLPRIDRVDGNEDTVRWMYDDTEDRLNALLDGGDHRDDHADADRRRY RRHREVTPRHLIHNYIAENGFRRPPIRDIR Harbinger1_TP2p: MSSSTAAAATDPTDDSGPPAIVDTAINTMAQSQSTLEDDGSTMTYSSVRHITSAHDGQPLSTETLLEGDG SSGQVQLYVENDVDTPPDNRIKFIIFLAKTIGIDVESDLKDIADRRGKKKLVQFTKTVLYREIMRRDPNA KVNKNNTSLDAMWNLLPALTDERDVVYIRSQYSSIRQRLVEDVEEREETIARRQDTDVWRFFLLIPKFED LRRAYAYSQTPSHREMLDGRETYKSRFLKLMVQYFNDSNISVSTPSQPSLHSCFSEPILCDKGDFELTEE KAKKILADSRRHLTTMINDWERSGNGSNQQRLEEDFFDELGDFDTWGRFDPGTCDGDDRSNFLRHLPVYW LMVWHLCDEGDLLRFTCAQLREEHSASSEITPGGVSRGSGTSSASKTGQKTAQQTYELQKELVSTVKDIG KAVAKFSDDTTYERASKIRRLDMLKDTRYEVYKDSKSKRNTAEERAVAAEYVKDLDERIATMEMELAVER GA
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||