Repbase Reports |
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| 2003, Volume 3, Issue 6 |
| June 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 105 |
HAT4_CI |
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Autonomous hAT-like DNA transposon HAT4_CI - a fossilized copy. |
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Submitted: 30-Jun-2003 |
Accepted: 30-Jun-2003 |
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Key Words: Nonautonomous DNA transposon, hAT superfamily; transposase; BED zinc finger; HAT4N_CI; HAT4_CI |
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Source: sea squirt |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HAT4_CI, a family of autonomous hAT DNA transposons from the sea squirt Ciona intestinalis |
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Journal: Repbase Reports 3:(6) p. 105 (2003) |
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Abstract: HAT4_CI is a family of autonomous elements related to the hAT superfamily. It encodes a 607-aa hAT transposase, HAT4_CIp (5 exons, 695-918, 1077-1099, 1214-1626, 1685-2399,2454-2902). The N terminal portion of HAT4_CIp is the BED zinc finger. HAT4_CIp: MKDSIMKRGRKLSSDVWEHFSPPNVENKVKCNYCHATLSYCQSTGSLMKHLKQKHPFTSL TRSEEGDSPSPSTSQLSVGETSIGDLRPINLVEGENFQALIKHLAPGYNIPSRMTFMRKL KQSLEICKAKIRDELSNANSIALTTDLWSSIRMQSFIGVTAHVISKDSAELRNFVLATKE VLEESHTGENIVEWIESILVDYHVSPAKIVGIVTDNGSNMRCVKEAVAIGPIKSAIGAAR HLVVYFCQSAKASAALRSQQTRSGDNCDLILDVPTRWNSTYAMVKRLCRLQWMVRQVLCD TSITPRTKAMHLELKDANWVILQQLIDVLAPIKTASDYIEGDQYVTLGSARTKAMHLELK DANWVILQQLIDVLAPIKTASDYIEGDQYVTLGSALPLIKSLAEKYNSNQGLETLQTPSH TSIMQAKSTMELSIKRRFPLFFANTGSMAPHPFFTKQHVRDELETEITTEGLDANETTQL RNTAKTRSQTSNDNPELCLQSILQCGVENAASSDDSIEEDCVAAEVSKYLKDKTACTDPL VWWKNKKSEYPQLYLLILKYLCIPATSASSERCFSSAGLTATALWSRLTGEHLEALNILH CNRTLLH The nonautonomous HAT4N_CI is a deletion derivate of HAT4_CI.
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Derived: Positions 928 4496 Accession No AABS01001724.1 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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