Repbase Reports |
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| 2003, Volume 3, Issue 6 |
| June 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 102 |
HAT2_CI |
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Autonomous hAT-like DNA transposon HAT2_CI - a fossilized copy. |
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Submitted: 30-Jun-2003 |
Accepted: 30-Jun-2003 |
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Key Words: Nonautonomous DNA transposon, hAT superfamily; transposase; BED zinc finger; HATN4_CI; HAT2_CI |
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Source: sea squirt |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HAT2_CI, a family of autonomous hAT DNA transposons from the sea squirt Ciona intestinalis |
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Journal: Repbase Reports 3:(6) p. 102 (2003) |
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Abstract: HAT2_CI is a family of autonomous elements related to the hAT superfamily. HAT2_CI encodes a 604-aa HAT2_CIp transposase (positions 422-2233). The N-terminal portion of HAT2_CIp (pos. 4-44) includes a BED zinc finger. HAT2_CI is flanked by 12-bp terminal inverted repeats. The HAT2_CIp transposase was also involved in propagation of HATN4_CI nonautonomous elements. HAT2_CI and HATN4_CI share common ~80-bp 5' and ~250-bp 3' termini, respectively. HAT2_CIp: MPVSNVWQWFSKSESDVSCKLCSKGFSLRCSTTTLKYHLQSSHKDKLAGASGPSSSGSSESDVLVQSDIR QYQVRPKLSDDESRRIDVLVSSFMWRDMRPFHIVEGQGFRDLVHGLNHQYKIKHRSTYQAITERTYKSAK SFLLDVLQHANYMGITTDMWTSIRNDSYITVTVHWITDDWKMQHGVLTTECMTEANTAENLSLRLTDVLA EYRITSNKISATVTDNGRNIKKAVDLLDDWTQLSCFAHTLQLCVKAGLDIPAVSRMRAGARRLVNHFKHS SKATAALREKQFSLRPGETVLDLITECPARWNSTFDMFDRLLLLQWCIRAVLTDFKITKPSVASSLQMSS TQWDLCQSLVHVLKPLKIATTMMSASKYPSIPWIYPVLFTLQKKLESCDIDSGATAHCKTAIREQIDKRF FASNWHRNLPVLASVLDPRYKFLKFIDNDATRQEVYDHLKGQITEFAAKYSDFEQHLQSESTNEAHTFDP FEELCGKDTKKQTVVAPEDEIKAYLREPAQPSDSDPLQWWKLNAARLPTMSLMARFYFCIPATSVPSECI PATSVPSESVFSSAGHIVNAKRASLTPANVNMLVFLNKNAHMII
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Derived: Positions 23356 26032 Accession No AABS01000165.1 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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