Repbase Reports |
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| 2003, Volume 3, Issue 6 |
| June 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 101 |
HAT1_CI |
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Autonomous DNA transposon HAT1_CI - a consensus. |
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Submitted: 30-Jun-2003 |
Accepted: 30-Jun-2003 |
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Key Words: Nonautonomous DNA transposon, hAT superfamily; 8-bp target site duplication; transposase; BED zinc finger; HATN1_CI; HAT1_CI |
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Source: consensus |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: HAT1_CI, a family of autonomous hAT DNA transposons from the sea squirt Ciona intestinalis |
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Journal: Repbase Reports 3:(6) p. 101 (2003) |
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Abstract: HAT1_CI is a family of autonomous elements related to the hAT superfamily. There are ~10 HAT1_CI elements in the C. intestinalis genome, they are 97% identical to the consensus. The consensus was reconstructed from 5 copies, therefore a transposase encoded by HAT1_CI is not completely reconstructed. The draft version of the HAT1_CIp transposase is 575-aa long (positions 617-2314). The N-terminal portion of HAT1_CIp (pos. 8-54) includes a BED zinc finger. HAT1_CI is flanked by 15-bp terminal inverted repeats (1 mismatch). The HAT1_CIp transposase was also involved in propagation of the HATN1_CI nonautonomous element. HAT1_CIp: MQSSRHKSKVWEYFSVEKGAVNCLLCKLNLSQGSTDTKKKNTTNLWSHLRVNHQKEYQESQKQILIEHKG QPTLEESFNQVRRWSNIDPRSKELDRIILEMMATDNRPFALVTAPGFQRLMAKAEPRYQLKSEKYYRTDM LDQVYCLVEKKIRELLCVENAGHFLSFTSDCWTGSTESLMSLTVHFIDTEWNRRQAILNAKAMMGSHTGQ YVSEIFKTMLQHWQINENRVFLVLRDSGSNMIKGMKLIDMPSLSCFAHTLQLVIEDGIKTQRTVINILAR LRKIATHFNHSVLAKQKLQDIQEQISVPKHTILQSVATRWNSSLDMLKECWSKEEHXLFMKVIMEQSHVP PVMNGNXLKIXLIHCLEPFKTITLEMSKSNACLSIILPNICALRLLLKNVGPKSRGIQTMRGEMLTSLEK RFLTIEQNKEVVMACMLDPRFKTKVMSPLSSQQGKEWILEEINNQNSSSPQPKKICLQAQSSSAAAHEPQ RSCLDAVFESLLGSSSIESGPTHELAQYLGEPVQKKNTDPHLWWKNNSCRFPSLEATARKYLSAPPTSIP SERLFSEIGNIYDLR
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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