Repbase Reports |
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| 2003, Volume 3, Issue 5 |
| May 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 96 |
Merlin1m_CI |
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Nonautonomous DNA transposon Merlin1m_CI - a consensus. |
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Submitted: 31-May-2003 |
Accepted: 31-May-2003 |
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Key Words: Nonautonomous DNA transposon, Merlin/IS1016 superfamily; 9-bp TSD; Merlin1_CI; Merlin1m_CI |
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Source: consensus |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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| [1] |
Authors: Feschotte,C. and Wessler,S.R. |
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Title: Merlin1m_CI, a family of nonautonomous Merlin/IS1016-like DNA transposons from the sea squirt Ciona intestinalis |
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Journal: Repbase Reports 3:(5) p. 96 (2003) |
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Abstract: Merlin1m_CI is a family of nonautonomous elements related to the Merlin1_CI family. There are ~250 Merlin_Ci1m elements in the C. intestinalis draft genome sequence (WGS assembly 1.0, 116.7 Mb). The sequence below is a consensus constructed from 20 copies extracted from the database. Elements can be grouped into subfamilies that range in size from 400 to 700 bp and have 90-99% similarity to the consensus. Some subfamilies have recently expanded because they are very homogeneous in length and sequence. The Merlin1m_CI consensus sequence is 605-bp long with 155-bp TIRs (5 mismatches). The TIRs are almost identical to those of the Merlin_Ci1 consensus, but the internal 295 bp are of unknown origin. Like Merlin1_CI, Merlin1m_CI elements create a 9-bp TSD upon insertion.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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