Repbase Reports |
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| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 83 |
TRANSIBN1_AG |
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TRANSIBN1_AG is a TRANSIB-like DNA transposon - a consensus sequence. |
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Submitted: 30-Apr-2003 |
Accepted: 30-Apr-2003 |
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Key Words: nonautonomous DNA transposon; TRANSIB superfamily; 5-bp TSD; TRANSIBN1_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: TRANSIBN1_AG: a family of target site-specific nonautonomous TRANSIB DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(4) p. 83 (2003) |
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Abstract: TRANSIBN1_AG is a family of nonautonomous DNA transposons that belongs to the TRANSIB superfamily originally identified in Drosophila (see description of TRANSIBN1-TRANSIB4 in drorep.ref). TRANSIBN1_AG is characterized by a remarkable target site specificity. Its copies are inserted into the CCagtGG target site, and CagtG is a 5-bp target site duplication. There are ~100 copies of TRANSIBN1_AG in the genome. The TRANSIBN1_AG consensus sequence was reconstructed based on multiple alignment of 30 copies. Given the ~2% divergence of these copies from the consensus sequence, transposition of TRANSIBN1_AG occurred recently (in the last 1 Myr). TRANSIBN1_AG has 17-bp terminal inverted repeats (2 mismatches).
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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