Repbase Reports |
|---|
| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 81 |
GYPSY6-I_AG |
|||
|---|---|---|---|
GYPSY6-I_AG is an internal portion of the GYPSY6_AG LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 30-Apr-2003 |
Accepted: 30-Apr-2003 |
||
|
Key Words: LTR retrotransposon; Gyspy clade; 4-bp TSD; gag; reverse transcriptase; integrase; GYPSY6_AG; GYPSY6-LTR_AG; GYPSY6-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Pavlicek,A., Kapitonov,V.V. and Jurka,J. |
||
|
Title: GYPSY6_AG, a family of LTR retrotransposons from African malaria mosquito. |
|||
|
Journal: Repbase Reports 3:(4) p. 81 (2003) |
|||
Abstract: GYPSY6_AG is a family of autonomous gypsy-like LTR retrotransposons. GYPSY6-I_AG, an internal portion of GYPSY6_AG, is flanked by GYPSY6-LTR_AG LTRs. The GYPSY6-I_AG consensus sequence was reconstructed based on multiple alignment of 3 copies; they are less than 1% divergent from the consensus sequence. Two elements are nearly 100% identical to the consensus and contain intact ORF, thus the family appear to be active. The consensus sequence encodes the 1511-aa GYPSY6_AGp protein (pos. 28-4560), composed of gag (zinc-finger, 317-353), reverse transcriptase (pos.690-859) and integrase (pos. 1207-1350) domains. GYPSY6_AGp: MSKEDGKVLRELESVSCPNSEPATIGKIRALYNDVLSITNTIESECIDQGDVDPKPTYSVTKEEASSAKP MHLSNHVEDEIAILKQRLEILELRSKIAVLENEKQASKINQPLLPEALKQIIPQFEDGVGVNHWLKVIDH SSEMYGWDDNTTMLYASSRLVGAAKEWYNGCRSEICTLSEFTAGLKRAFPDNRNEAAIHKELMSVAKRRD ETYTAFIYRVNAIGKSGNVSDEAILTYIINGLARDRIYDNLVVRDYKDIYELMAHIQRCETLLKMRDTPS TSSYQRLENTRVNENQREKPNRAAQINRKDALASVRCYNCSSFGHYSGQCLKPRRTIGACFSCGQHDHQK LECANAAGKNNIPVFATNETTSERDSYADIEKIKAYQQVSVSLETLNGVKKFHSYVYSLFDSGSPTSFIS ETFVPDGAAKKASPSGYKGLGNKPLSSLGHIVCNIGFRHKIISHRFIILSKSDMDWPIIIGRDALDKLNV HLYHSFYLYSKEKLLSLNNKTMNYLKPHMMERLISLGVLKNDSDDRLKRKMPLIKAIEENKYNLKEIPFH SLNHAILESSLSNRKKDDNSNQSFISDEFKYGETFAEMCAIDVNLPEHDFNIGSIVGIRERKQISSIIID NYIKRQTGKIYKENHKMTISLTHDTPIFCKPRKLSFAERNHVREIVKDLLQRKIIRQSNSAYASPIVLVK KKNGETRMCIDYRPINKITVRDNYPLPLIDTCIEHLGDKQYFTLLDLKNGFHQIDMAPASIKYTAFVTPD GQYEYVKMPFGLKNAPSEFQRCINSVLREFIDNREIVVYLDDIIIASKDLHNHLRILSAVLQTIRKNGLE LKLEKCMFVHDELDYLGYHASSKGIRPSNYHIKAIENYPQPSNSKEVQRCLGLFSYFRRFVPSFSTIAKP LSSLLKQNAPYNFDGPCISAFNTLKEMLIKAPVLAIYDPQKETELHCDASSVGFGSVLLQKQFDGKFHPI AFFSKTASPAEAKLHSYELETLSVIYALKRFHTYVHGVPIRIVTDCNSLVETLKNKNCSAKIARWSLFLE NYDYTMQYRPGCSMGHVDALSRQQIAVATQDLDIDSQLRIAQSRDQEIERLKSVIERGMVNGYTLHDNLV FRKLENGRLQFRVPRDMINNVIRSTHESIGHLGVDKCCTQISKNYWFPLMKTRVENFIKNCLKCIIYSAP ARKNNRNLHSIPKIPLPFDTIHIDHLGPLPSLQSKKKYILVVIDAFTKFTKLYPTTNTSSREVCNALNQY FSYFSRPRRLISDRASSFTSTEFKQFILKHNITHVLTAVCSPQANGQVERVNRVIVPILSKLSDPIDHAD WSSKLIAAEYALNNTVHSSTRISPSVLLYGIEQKGPNINELTEYLKDNIPTTPRDLESIRVQASENIVNS QFTNETQFMKTHRPAIEFEVGEYVVIRNVDNSVNTNKKLIAKFRGPYVIHKRLPNDRYVVRDIEGFQQTQ IPYDGVLESDKLRRWIASETDLASESLEVSPSDSLAGPDLG
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||