Repbase Reports |
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| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 71 |
BEL6-I_AG |
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BEL6-I_AG is an internal portion of the BEL6_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 30-Apr-2003 |
Accepted: 30-Apr-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; reverse transcriptase; RNase H; integrase; BEL6_AG; BEL6-LTR_AG; BEL6-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A. and Jurka,J. |
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Title: BEL6_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(4) p. 71 (2003) |
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Abstract: BEL6_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL6-I_AG, an internal portion of BEL1_AG is flanked by BEL6-LTR_AG LTRs. The BEL6-I_AG consensus sequence was reconstructed based on multiple alignment of 13 copies; they are ~0.3% divergent from the consensus sequence. Some copies can be active. The consensus sequence encodes one 1733-aa BEL6_AGp Bel-like protein (pos. 65-5263). BEL6_AGp is composed of the peptidase (pos. 150-275), reverse transcriptase, RNase H (pos. 1090-1180) and integrase (pos. 1450-1600) domains. BEL6_AGp: MTRTPRTSRTPTVKPAPQPGWVDVIVAVRPHVHMRDLAYGELIRIRDNIVQAKEEGKALTAVQCKVFGKK ADSALEEHNKHYGEIIKHDESEVHDAKFKETVKLHEEVMMEIESASEALAAQSISPKALIPAPSVSSVIV NAPLPRPIPSFSGKYEEWARFKTIFKDIVDKSSEDSRIKLYHLEKALSGEAAKVIDEKTINDGNYERAWQ LLSERYDNKRRMVDLHISGLLNLKKVNEESYVGLRGLVESVESHVENLKYLGENFTGLSCAMVIHLIANA LDIETKKLWEASVPRNELPCYEKTLCFLKERVSVLERCQGNVAAGQRGRFVSKGPSSSGVTPMRSNAATT VCSVVVCELCKGAHETFKCSELMRLHGKDRESFIRSKRLCLICLKPGHWRNRCKSHLNCNRCHGPHNTVL HWDNGPEPVSREPEQVSASQHVNNTDAAGSIVLLQTVLLYAELPNKEVLLCRAMLDSGSQISCVTEALAT KLGVNLVNVNVPVKGIGNIESSVKKKCTFTVKSRCSDFAMDVTCFVYREITGRIPSVYFDTSKWNLPDKS MLADPYFNNPSCVDILLGMDCLSEIMESGSVKLAKTLPMMTDTHFGWVIGGRVAEIHKEREVYTNVVTKE NLETIVQRFWEVEDVTSERSVKVEDEICEEHFVKTHYRESSGRYVVQLPLRESISQLCCSRSVALRRFYL LETKLLKNPSLREQYQAFMSEYEELGHCRVVDESEDDGSVKRWYLPHHAVLNPAKNTTKCRVVFDASAKV NGLSLNDVMMTGPKVQHDLLSIKLRFRMPRYVVSADISKMFRQIKVDPCDSPLQRVFWRASPNEQLRVLE LTTVTYGTAAAPFLATRTLLQLARDEREGFPLASRIIEENFYVDDGLFGANDIETVHAAQVQLIEVFRKA GMTLHKWSANDERLLESIPFEDRDALTKIGDCEANEIIKTLGLMWNPMNDEFIFLTKVPSKGRTPTKREV LSAIAKIFDPLGLISPVVVLAKILMQKLWLAKLDWDDQISEPLIEEWDNFLEALPTENQVRIPRHVVSTN AVSLEIHGFADASLKAYGACVYIRSIERNGEAQLRLVISKSRVAPLSNVTIPRMELLAASLLCRLVKKVL EALKDFNFETINLWSDSQIVLAWLKKPIECLNVFVRNRVAEINENRAFIWRYVRTHQNPADVISRGQSAS LLVSNEMWWNGPEFLRTCEIPNVCIDELNDDEIPELRNEVICNVIVPLKVLPILEKYESFRKTQRILAYI VRFKQNTKRRKGERINDPNPTIPELRESMRWIIRAIQHQDLPEVVSAVKNSKPLQRYQDLNLFLDGELLR VGGRIRHANLAFGNKHQLLLPNRNVITHRLIATIHRENLHVGPSGVIAILRQQFWVVNARSTVRMVLHKC ITCFRSKPTTLEQQMGDLPSYRVTAAPTFQRVGLDFAGPIMLKSGIRRVAAIKGYICVFVCMVTKAIHLE AVEDLSTGAFLSALRRFVSRRGIPEEIFSDNATNFVGAKNELRELYEMFRKEATGQGIFQFCQEKEIVWK MIPPGAPHFGGIWEAGVKSVKSVLKKIYKSASLTITDFSTLLCQIEAILNSRPLYAHSNDPNDLECLTPA HFTIDRPLIGVAEPSYLDMPEGRLNKWQRIQQLRQQFWNRWQREYLCELQTRYKWTKIRDNVKEGALVLI KEDNTPPQLWKLGRIARVFPGEDGLIRVVDVKTRSGEFKRPVHKLALLPVIDP
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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