Repbase Reports |
|---|
| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 69 |
BEL5-I_AG |
|||
|---|---|---|---|
BEL5-I_AG is an internal portion of the BEL5_AG LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 30-Apr-2003 |
Accepted: 30-Apr-2003 |
||
|
Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger; reverse transcriptase; integrase; BEL5_AG; BEL5-LTR_AG; BEL5-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Kapitonov,V.V., Pavlicek,A., Drazkiewicz,A. and Jurka,J. |
||
|
Title: BEL5_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
|||
|
Journal: Repbase Reports 3:(4) p. 69 (2003) |
|||
Abstract: BEL5_AG is an young family of Bel/Pao-like LTR retrotransposons. BEL5-I_AG, an internal portion of BEL1_AG is flanked by BEL5-LTR_AG LTRs. The BEL5-I_AG consensus sequence was reconstructed based on multiple alignment of 20 copies; they are ~1% divergent from the consensus sequence. The consensus sequence encodes one 1723-aa BEL5_AGp Bel-like protein (pos. 93-5261). BEL5_AGp is composed of the peptidase (pos. 118-200), RING Zn-finger (pos. 300-375), reverse transcriptase, and integrase (pos. 1414-1600) domains. BEL5_AGp: MAEARKVKSLRIQQTATQLSIQAIHTFSKSYNKETQRAEAIIRKQNLQKQYAKFIDLQDE LLPLDEGNEAENLALRQTVESAYYDAEANLASAVEANDKKPCVPASNIKLPDVKLPVFDG KPQNWSSFHSIFVAMIDSAELYSGVQKLYYLRTSLSGPALQLIQSVPISEENYSVAWNLL LNHYNHPKRLKQLHVEALFEDAALKKECANELRKLIENFEANVNALTQLGEPTAQWDTLL IQMLSRQLDPSTLRSWKEHSAEKKIDSYSDLVAFLYRRVGVLEVLPSTSSGKPPKQRVFA TTTMPNNNTKGCACCNRDHPVYTCDEFKKLSLNAKQKVITQHKLCYNCLRPGHHLRDCKS ASTCKSCHKRHHTQLCSLPQPSPTVPSSEEDQRDPPTTLASTSVVESITCASAGQHKTVL LATATVIIVDDEGHKHNARVLLDSGSESCFITENLAQQMKSTRERSNLCISGISSTNTTA KQSIRATLRSRVGRYFANLQFFILPRVTGNLPSSSIDTTGWNLPDNIFLADPHFDCIGRI DVLIGAEVFFDIMRPAGRILLGKDQPVLVNSELGWIVSGPAVSTLTPTSQASSITVNHAS TTVQDVHKLMERFWAIEEGEIVNAQSNEHAACEEHFRRTVSRNSSGRYVVRLPLKEHLLT KLVDNRKAAVRRFHFLQSRLSSNNEFRNSYSSFIDEYAELGHMKRISEEEYNNTNQHHYY LPHHAVTRQESLTTKLRVVFDASSKTSSGISLNDVLMVGPTIQDDIRSIIMRARKHSIMI VADIKMMYRQVLVDARDTSLQLIVWKPTPSESLQTYKLCTVTYGTASAPYLATRVLSQLA DDEGSSYPIAAKVLKKDFYVDDLLTGTSTAAEASEVITQLTALVSKGGFTLRKWATNDEQ VRQTISKDKLSEDESFCFDRDQIIKTLGLHWHPLNDSMTYRIKPFEEKLITKRSTLSGIA RLFDPIGLIGPVVTKAKIFMQSLWTLKASDGSIWNWDTELPEQLQKQWLSFKNELNLLNT IQIQRCVLLNEATSVQLHIFADASQTAYGACAYLRSTNKAGQIKTSLVASRSRVAPLKSQ SIPRLELCSALVASELYKSIQQAMQLDADIYFWLDSTVALYWIQASPSKWNTFVGNRVSK IQQATSSCTWSHINGQENPADHISRGLTASELVNCDLWWNGPPWLQLDQEQWPKPQLSSQ LPSEVSIEGRSITTTAAATKSPPCDAILLVNELLSKFSDYHKLLRVIAYCFRMRTKRDSS QETVVISTDELWNAEIRILQVVQRDIFEKEWTQLRQNSPVSNKSRLKWFHPFLCDDNLIR IGGRLSKSNQPFESKHQILLSAGHPLAEMLIRHLHKKHHHAAPQLLITILRQKYWVIGAR SLAKRICHECVPCCRARPRLLEQFMAELPTSRITPSRPFSIVGVDYWGPIGLSPIHRRAS SGKAFVAVFICFATKAVHLELVANLTTAKFIQAFRRFVARRGLCSDIHSDNGRNFLGASR ELRALVTSKQHRIEIIQECTSQGMRWHFNPPKASHFGGLWESAIHSAQKHFFRVLGKTTL PQDDMETLLCQIECCLNSRPLVPLSDDPSDLEPLTPGHFLVGSNLKAVPDNKLEDIPSNR LKHYQLVQKLLQQIWTRWSAEYLATLQPRSKWLKPPVKIDVGQLVLVKDESTTPLHWPLG RIIKTHPGDDGVARVVTLKTASGEYTRPIAKLCLLPVTSMVQN
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||