Repbase Reports |
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| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 68 |
BEL4-I_AG |
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BEL4-I_AG is an internal portion of the BEL4_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 30-Apr-2003 |
Accepted: 30-Apr-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; reverse transcriptase; integrase; BEL4_AG; BEL4-LTR_AG; BEL4-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A., Drazkiewicz,A. and Jurka,J. |
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Title: BEL4_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(4) p. 68 (2003) |
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Abstract: BEL4_AG is a family of Bel/Pao-like LTR retrotransposons. BEL4-I_AG, an internal portion of BEL1_AG, is flanked by BEL4-LTR_AG LTRs. The BEL4-I_AG consensus sequence was reconstructed based on multiple alignment of 10 copies; they are less than 1% divergent from the consensus sequence. The consensus sequence encodes one 1761-aa BEL4_AGp Bel-like protein (pos. 95-5377). BEL4_AGp is composed of the peptidase (pos. 158-300), reverse transcriptase (pos. 800-930), and integrase (pos. 1480-1625) domains. BEL4_AGp: MPVDHSPVKEVVPAANNMEESQSSTVREFGSVPDVTKLDRQRTHLEWQLDRLEQMFVKHSTDVHSLKTIA DRVKVLALDYKQWYDSILDVVSDDQAQEAIERYGVFDDKVFELSKNIEYQLASQIPLPTTPNPFFGSEQK PTTVPVRARLPEIVLPHFDGNIRDWPAFRDAFQSLIHSSEQLTECDKLHYLAASLTKDARAVIDALEITS KNYDVAWKLLSERYENKYLIVKTTVEALFNISPLKRECADSLSRLVDDFERNLRMLEKEGEKPDAWSTLL VFRLSSLLDPTTLRHWELHRKSTTIPTYKDLVQFVRNHCHVLKSFSKPASGARTGDTMRSNPRVQTIHAA TSAVHSVAYNEKCKLCGVSKHSVFRCELMNNMSVADRKQLVQSKGLCFNCLSPAHRLRQCTSSGCKICQQ RHHTLLHEAAPATEASDAPSTSSTCPPQSLTHCSIQIENSVVLLQTVLVQVEDNHGRCHLARALLDSGAQ LNIVTERLTQRLGVAKRRENHRIGGIGEVSVTSQHSAVLKIHSLDSEYTASGKFHVLSKLTRELPSSRIN TSSWQIPRQVQLADPSFHSPGPIDLIIGAELYYDVVKEGLIKLSHERVTLQNTAFGWVIAGRVNVHAPPP PSSIVGHVCSTSIEEQLSKFWELESCRATSTLSVEESNCEKQFATTTTRDTDGRFIVQLPKREEKLALLG DSKGIATRRFLALERRLSSNASLKTAYTQFIEEYAELQHMTEVAESDATTSSPSYYLPHHCIVRPDSTTT KLRVVFDASCASDTGTSLNDALMIGPTIQDDLMSILLRFRMSKFALVADIEKMYRQINIAAIDRPLQRIL WRNSPTEPIRTFQLNTVTYGTSCAPYLATKTLQVLSQVGASTHPEAATILGRDFYMDDMLTGVNSIPEGQ RVCQQLIDLLASGGFCLRKWATNNRQIFEHLPQHLQDERTILNLDAKSPIIKTLGLKWNVSTDAFVFNIP RWNADNIITKRNALSDVAKLFDPIGLVGPVIIQAKLFLQELWRCQIAWDEPLTPALQNRWLLFREKLAML QTIHIPRWLLTDQRATNLQMHCFCDASEKAYGAAIYLRSTNTDGRVTTNLITAKSKVAPLADSRKQKRVC LPRLELSAALLLAHSYEKVSDALKLQVETIFWSDSTIVLHWLSATPSRWKTFIANRVSEIQHITHGKEWR HVPGTDNPADIISRGMDADQLETSTLWWHGPDWLAQPSEEWPNTHQPRQEEFTTDELEERPICMAVQSVA PNELFSLRSTFTGLQRLVAWLRRFRHNTNPANHQQRRLDHHLSLEELAESTLCLVRLAQAESFPEDIKHL SKGDSVGNNSPLKLLAPFLQDGLLRVGGRLRHAPIPFDRKHPYILPANHPLTNQIATLYHRTYQHANPQL LIASMRERFWPLRAKNLARRIVHSCYKCYRCRPTPAQQLMGDLPAERVTPTSTFLHTGVDLCGPIHYRHT SRKAQLIKGYVAIFVCMAVKAVHIELVADLSTNAFLAALRRFIGRRGKPAIIECDNARNFLGASREIASL SKQFNHQWQTSVIKSCIDDGIQFKFIPPRSPNFGGLWEAAVKSFKTHFKPTVGNAILTSDELNTLLIQIE GCLNSRPLTPLSNDPSDLEVLTPGHFLIHRPIVSLAEPSLEKLPFNRLDRWQKVQEFVRRLWKRWSTDYL SGLQQRTKWTKQKDNVKLDTMVLLKEDGLPPSKWCLGRVTQIIKGADDNIRVVIVKTKDGDFKRSISKIC VLPTDEPSSSS
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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