Repbase Reports |
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| 2003, Volume 3, Issue 4 |
| April 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 67 |
BEL18-I_AG |
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BEL18-I_AG is an internal portion of the BEL18_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 30-Apr-2003 |
Accepted: 30-Apr-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; reverse transcriptase; integrase; BEL18_AG; BEL18-LTR_AG; BEL18-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: BEL18_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(4) p. 67 (2003) |
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Abstract: BEL18_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL18-I_AG, an internal portion of BEL18_AG is flanked by BEL18-LTR_AG LTRs. The BEL18-I_AG consensus sequence was reconstructed based on multiple alignment of 4 copies; they are ~1% divergent from the consensus sequence. The consensus sequence encodes one 1985-aa BEL18_AGp Bel-like protein (pos. 183-6138). BEL18_AGp is composed of the peptidase A16 (pos. 360-450), reverse transcriptase (pos. 970-1149) and integrase (pos. 1680-1830) domains. BEL18_AGp: MEHEHExKAPPAVAQTNESQQPETGALDHRPLAPAADSLHFRSFAPTGQDWTVNSSLEIVDRARSSTPNA PLGAGLLLRxPQQRLTSEVREAPASRYTPLANSTVADLGxLHRSSSETVPRLAHLPTTADVQQPAPSQGG VSAGTVPRAADGASGAAIEDMELxPQAQDGASAGTVLRTAVGASGAAISNVHQPTPSQTGTPGRTMADKL AESSEAVAALELRMRNLTRRKLELERRELEFEEQLILAESKRIGDGFISMIDDEGESNKMVDWSRRGDSE GHSSHHPNVSPSSSRTVPPGNAQQGNDSVVSQQRQPRSGEYLNIADGAVDTYPFRNSIGTTLMNVNQSQI LARKASCKELPYFSGKPEEWPIFIATYETSTAACGYSDEENTLRLQRALKGKALEAVQPCLLHASNLTSV IETLRMLYGRPEIIVHSLIHRIHQMPAPRIERLETVIDFGMAVRNMCATITASGLEEYKCNVALMHELVE KLPHALRLDWARHRMQSSSATLSEFGKWIETQVKAASLITLPSLEFRPERKLDHKSRTHHMNIHNATGLV SEGSQICLLCEATCVDLSQCEQFNRLNVNDRWATIRRLNACRKCLKIHTYGCKGKKACGKNGCEYLHHEL LHNPERHSKPNEYAVATASLNAHSEVTGDVFLKYIPVIVYGRDKAITTFAFFDSGSTGTFIEHSLIEELG LEGQPHPLCLKWTGNSERDETGSIRVSLLEISGVGQNSSVHIIPKVHTVQSLSLPAQTLAVTQLTKQYAH LQGLPIHAYENARPRLLIGIDNHHLVRPTRYAEGGKYEPVAAKTSLGWIVYGPRNKNSNSVNIQAIHTIH ICNCGADAEANLDAAVKNFFTLESLGIVKPLETLRSKDDERALGILNAESKFNGKHYESGLLWRFDDVKL PCSRDMAMRRYKCLQKRMSKDSVLAKAVIEKMRDYERQGYIRRLSPEELSMKGSRDWFLPIFPVFNANKP GKVRVVFDAAAKVQGVSLNTYLLNGPDLLAGLLSVLYKFREHRVAIVGDIKEMFFQVRMKPDDQRSQMIL WNENDFTGSEPDVYAVAVMTFGAACSPSTAQFIKNLNADRFADKYSRAVKCIKEEHYVDDLLASAETDEE IITLAEQVRHIHAEGGFEIRNWLSNSHRVTSHLQREASPEDKINMCSDDRTEKVLGMWWDTLTDTFTFKL SPKHDIQLLSGGRMPTKRDVLRTVMAIYDPMGIIANFLMYVKILMQEIWRAGLGWDDVLSGRLAEKWSVW VAVLPTISQVRVPRCYRQFTSVNAKIQLHVFCDASENGMAAVAFFRFNDGGIIECSLVGAKTRVAPIKFV SIPRLELQAAVIGARFAAAIIAQHRIAIERIFYWTDSRDVICWMRSDHRRFSQFVAFRVGELLETTSVHE WRWLSTKLNVADDGTKWQKVPTADPDSRWFRGPDFLWKPECEWPVPEQYPTDTKEELRLHMMHHNTNTKP WIQLERFSSWNRLLRSVVYVLRFVSFIVSKRTARTTGPLTQGELEKAEYAILRLAQRDAFSQEIRRLTDA RDASEQRCTWKSVLPKTSILAKLSPEVDDNGVLRMRGRLTNCPWVSESTKRPVILPRQHQVTALILADFH RRFQHINHHAAINAIRSKLYIPRLQAEFNRIRRTCQHCKNRDAKPEPPEMGNLPSERLAAYQKPFSFTGV DYFGPVTVAVGRRVEKRWGVLFTCLTTRGIHLEAAHSLTTSSCILAIRRFIARRGQPLEFISDNGTNFVG ASRELAEAWEAIDKQRLAEEFTTPRLAWKFIPPGGPHFGGCWERLVRSVKKAMSEIRMSRLPTDEVLTTA LTEIEAMLNSRPLTQVPLDSESELPLTPNHFLLGTANGEAPKAVFSDDIATLKTTWKVSEVMANLFWKKW VAYYLPTLTRRVKWHHQVRPIKEGDIVVIVDPNLPRNTWPKGRVVAVIQSKDGQVRRATVATSTGIYERP ATKIAVLDVQQENNTYPPETNSxQH
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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