Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 58 |
HAT1_AG |
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HAT1_AG is a hAT-like autonomous DNA transposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: Autonomous DNA transposon; hAT superfamily; 8-bp TSD; transposase; HATN4_AG; HAT1_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A. and Jurka,J. |
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Title: HAT1_AG: a family of autonomous hAT-like DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 58 (2003) |
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Abstract: HAT1_AG is a young family of autonomous DNA transposons that belongs to the hAT superfamily. HAT1_AG elements are less than 1% divergent from the consensus sequence. The genome harbors 6 HAT1_AG elements. HAT1_AG has imperfect 11-bp terminal inverted repeats (3 mismatches). HAT1_AG encodes the 603-aa HAT1_AGp transposase (pos. 1473 - 3284). The N-terminus of HAT1_AGp (pos. 10-50) is composed of the BED zinc finger. HAT1_AGp: MMAPTNATTSPVWDHFSPVETGAKCLYCLKVFKYTKGTTSNLKRHLNLVHKTVPYLKQKQ PIPQTINIDDEAGPSAVNFQPSNQYFNSNMSIQGYLKKPINSETKKVLDRMLLDLICKEC LPFNLVESEIFKKFVYTLNPNYIMPTRKSLSNALLPSVYNQEFEKAKEKLSTAKAIAITS DGWTNLNQISFFALTGHYIDENCKLSSILIECSEFENPHSGRNIANWIQGTLNKFDIEDK IVAMVTDNASNMKAASTELNFCHIPCFAHTLNLIVRDAIKKSVLPVVEEVKRVVMLFKKS PKASQMLADTQKKLNLDQLKMIQEVSTRWNSGYDMLNRFYKNKIALLSCADSLKMKISLE SHDWEAIEQIVRVLKYFYSATNIVSAQKYITISHVGLLCNVLLTKTSQFRNDEDIAENIQ NLVALLIEGLQNKLKIYRSNEQILKSMILDPRIKQLGFQDDVEKFKNICESIISELLPLQ KPAVEVEKVVKKVSKDVDMLFGDLLKNKGAQNYKTPRQIAENELHQYLSVENIDLENDPL LWWKEHQVLYPSLYTLAMSTLCIPGTSVPCERLFSKAGQIYSEKRSRLAPKKLQEILFIQ QNA
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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