Repbase Reports |
|---|
| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 55 |
COPIA5-I_AG |
|||
|---|---|---|---|
COPIA5-I_AG is an internal portion of the COPIA5_AG LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
||
|
Key Words: LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; integrase; COPIA5_AG; COPIA5-LTR_AG; COPIA5-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Pavlicek,A., Kapitonov,V.V. and Jurka,J. |
||
|
Title: COPIA5_AG, a family of autonomous, copia-like LTR retrotransposons from African malaria mosquito. |
|||
|
Journal: Repbase Reports 3:(3) p. 55 (2003) |
|||
Abstract: COPIA5_AG is a young family of copia-like LTR retrotransposons. COPIA5-I_AG, an internal portion of COPIA5_AG is flanked by 100% identical COPIA5-LTR_AG LTRs. The consensus was reconstructed from 5, >99% identical, copies of COPIA5-AG internal sequence. The consensus sequence encodes the 1312-aa COPIA5_AGp protein (positions 76-4011). COPIA5_AGp: MALPSSSNSSSSFVGSTSIPSIERLLGRENWTSWKFAAKTFLQLEGLWEVVKPVKKEDGTFETVDEKKDL QARLKLILLLDPTIYVHIEDAESARSAWDKLEMAFEDKGLSRQIGLLHKLIKSDLDTCGSMNSYVNQVIS TANQLNAIGFKLPDLWVGMILLAGLPEEYRPMILAMENSGVAITGDYVKTKLLQERPLLRNENVQALATN KRREVFKPKQKPSSSKGPQCRKCGRYGHIAKFCKDDRKGGTTLCTVLSTFGNSEANEWILDSAAYAHMTS NKDLLSNLQNATGKVVAANGGTLDIVARGTAIIQPKCMEEIVTISDVKLIPGLTSNLLSVSRMVEKGYTV QFNTKGCKVYNPSGKLVLTGIHNNNQFKVEQVANNMQEALSCNTAESFELWHKRMGHLGAVNLKKLAGGL ATGITLKNMDGADCRVCPLGKHSKLPFPKKGSRAENVLDLVHSDINGPMETHSLGGHRYYITFIDDKTRR IFVYFLKTKSEVEVFEAFKRFHAMAERQSGRKLKTLRTDNGKEYMNKSLTSFLQKEGIRHETSNGYTPQQ NGLAERANRTIVEMARCLLFEGNMTKGFWAEAVSTAVYLINRSPTRGHNLTPEEAWNGRKPDLSHLRVFG TKAMVMIPKEKRRKWDPKSHECVLTGFDEETKGYRLYDHKKKQTIISREVIFLDEGCSSNVTVTAMQEPR RTFVRLDIEETTSIQPVQIPVPNFAPDAGSDSTLEENDAETDGELDESTTDDENNTSTETMVQSEDDSSD FLGFSGSDVDGFVAVASGMYSGTYADPVSHQEALARDDSKEWGTAMQEEYNALMENKTWTLTSLPKGRQA IKCKWVYRTKCDSSGNLTRYKARLVVKGFSQRKGEDYDETYAPVVRYCSLRYLFALAIKHDLMIDQMDAV TAFLQGDLDEDIYMEQPPCFVDGQRKTLVCKLNKAIYGLKQASRVWNNKLDAALQRFGLIPTQYDPCVYV GSEGGKIIIVAIYVDDMMIFSNDVAWKKQLKKHLCSCFRMKDLGAAQHCLGIRIQRTKETIKLDQEIYIE SILKRFNMDKCKPVAVPMNNSEKLTKEESPKSNNETAAMKDVPYQEAVGCLMYLAQSTRPDILYAVNMLS RFNKNPGQKHWNGVKHVMRYLRGTSNFKLVYKKNVDSKIIGYCDADWGSDPDERKSTTGNIFMAQGGAIS WMCKKQPTVALSTCEAEYMSVSAAVQEASWWRGLSAKLANADEVIEIRCDNQSCIAIAKNGGYHPRTKHI DIRHHFIKDALSRGIVTLEYVSTEDQIADGLTKPLQRTKFEISRELMGISEA
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||