Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 53 |
COPIA4-I_AG |
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COPIA4-I_AG is an internal portion of the COPIA4_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Copia clade; 5-bp TSD; reverse transcriptase; integrase; COPIA4_AG; COPIA4-LTR_AG; COPIA4-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Pavlicek,A., Kapitonov,V.V. and Jurka,J. |
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Title: COPIA4_AG, a family of autonomous, copia-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 53 (2003) |
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Abstract: COPIA4_AG is a young family of copia-like LTR retrotransposons. COPIA4-I_AG, an internal portion of COPIA4_AG is flanked by >99% identical COPIA4-LTR_AG LTRs. The consensus was reconstructed from 6, >98% identical, copies of COPIA4-AG internal sequence. The consensus sequence encodes the 1322-aa COPIA4_AGp protein (positions 112-4077). COPIA4_AGp: MSTEEANSAGPSRESSAGAAALSGHAVGSNNLAMNVGIEKLKGRENYVSWAFAMKMMLCRERCWDIVTAR DDKAVDKDMDMRALSTIALSLEKHNYSLVMDANTAKEAWEKLKAAFTDDGVFRRISLLQELVSFKLNNFS STEAYVDAIMSTCHKLREIGFEVSDIWVSSILLMGLPKYYAPMVMGLEASGMAMKADAIKLKILQEVKTT CHKDDEALFSRGNPNLRKGGGAMKRSTKEVTCYNCQKLGHFAINCPEKQKHKKNNKTRAMSSVLAMGDVS ECEWYFDSGASSHMAKSGVDFSERQHICHEVSTANNASMKAITKGTVSVNCQEGAVNLLNVLEVPDLATN LLSVSKICKNGFKVVFTERKCEVFDENGEVFASGIAENGLYRLNENRVRTFLSYEIWHRRLGHLNFQSIQ RLKGMADGIQTKQTNTYNCVACIEGKHARESFPTSQERCKEKLELIHSDLCGPFEVESIGGSKYFMTFID DATRKVFVYMLKSKDEAKTVYEKFKSMVQRQSGRQIKLFRSDNGREYVNASMKASMERDGICHQTTCTYT PEQNGVAERMNRTIVEKVRSMLNDAQLPKRFWAEAVNTAVYLINRSPTRALNDITPEEAWSGKRPHLGHL KIFGSTVMVHKPKQKRVKLDPKSERCIFLGYAHNTKGFRVFNVATNEIIISRDIIVVDEGQCEGFGKEQT TPVEFLELLFAEGKDESNSTRNNPINISPTEEASDGQTEETPTRFDQSNETPRRSQRQHKLPSKYKDYVI NRKFVPSSTLANEAENVSSDSDYTTPESESDEALVVFSQREDPRNYAEAMKSEDAKQWMDAIQEELQSIE ANNTWSLVDLPPGRKAIGSKWVFKTKRDVDGNLLRYKARVVAQGFSQQFGTDYDEVFAPVVKQTTFRVLM GIAAKRGMAVKQYDIKTAFLYGDLEEEIFMKVPQGVKVEDNKVCRLKKGLYGLKQSARSWNQRLDQELKR QGYTNCLADSCLYRKRCGKEWCYVLVYVDDLIVAGDNLDMIESLLAELKKSFEVNILGDIRFFLGIEVEK NKQGDYFVNQRNYIKDVIISSGLTDAKPSSIPLDPGYIKIEAEEIELSDNKEYQQLIGKLLYIAINTRPD ISAAVSILSQKISKPTQRDWCELKRVVRYLKGTINYRLRLSEKGCDNGIIGYCDSDWAENRIDRKSNSGY VFKVNGGTVSWTCRKQSCVTLSTAEAEFVAISEGIQEALWLKLLLEELNDVQEVIIHEDNQSCLKILSGE KLSNRTKHIATRYHFTKDLIKKGQISCVYCSTEEMIADLLTKPLARIRIQKLVSLIGLSVSL
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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