Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 47 |
BEL9-I_AG |
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BEL9-I_AG is an internal portion of the BEL9_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; reverse transcriptase; integrase; BEL9_AG; BEL9-LTR_AG; BEL9-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A. and Jurka,J. |
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Title: BEL9_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 47 (2003) |
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Abstract: BEL9_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL9-I_AG, an internal portion of BEL1_AG is flanked by BEL9-LTR_AG LTRs. The BEL9-I_AG consensus sequence was reconstructed based on multiple alignment of 18 copies; they are ~1% divergent from the consensus sequence. The consensus sequence encodes one 1746-aa BEL9_AGp Bel-like protein (pos. 234-5471). BEL9_AGp is composed of the peptidase (pos. 131-263), reverse transcriptase (pos. 760-900) and integrase (pos. 1427-1596) domains. BEL9_AGp: MDKKIKAVQLKKRIALENIKSLERFQAKYSSDDAKQIPEVLEDLAKHKEEFFTAVSKLEELEDKDEAVEA SIMERIDIEERCRKLKSFLRERQPKEEGSLNDTTGLASSTLAFGRPHAPNLRLPKIELPTFDGDHTKWLS FRDRFIAMIDASAELPSIAKLQYLLSSLKGDAAVPFEHTPLTADNYSVTWAALLKRYDNSRLLIREYYRK LHYLPGVQLVCVDKLTHLVDEFTRFVNGLKKLNEPVDSWDTPLSNMLLMKLDRETLLAWEKHSVHFTTDK YKDVIDFVQDRIQILKSTNNFVKDQAASGIKVAGLIRQPGQRRFIANAATSRSAPAASTAHTQQPKCPLE CSEDHTLRNCPVFIAKEVQQRRDVVASKRLCWNCLSSNHQVRACKSDYSCRTCRERHHTLLHHSPPYAPP ATVTLSAQSNEDNVFLATANIQIKDDYGNTHEARALLDSGSMSNFIAEEFARKLLTSRKRVNVAVSGIGN AVQQIKGSIVATVQSKTQPFATEMTFLVLDTPSANIPTSPTDVSSWKMPDVALADSTFNSPGQIDIVIGG DTFWELHTGRKRSIGRGKPWLVETHFGWVVTGNTHHSSVGPRLCHLSAYDTPLEETMQRFWESETIAEDP VLSVEENACEKHFAATTVRNSSGRYVVSLPFNSNPNIVLGESKEIADRRLRCIERRLNTNAKMKEEYVKF MKEYEHLGHMKRLTSPANDSVEHYYLPHHAVIKESSTTTKVRVVFDASCKTSSGYSLNDKLLVGPVVQED LLSIILRFRSRAIALTADVEKMYRQILHSPHDRNYLRIRYREHPADPISTFELQTVTYGTASAPFLATRT LKQIALDHKEEYPLAMNAVMNDFYVDDLLTGTDDLSEAIVIQRQISDMLNSAGFTLKKWASNRSEALKNV PSEDVAVQLSHEWKSSKQVSTLGIVWEPATDTLRFRIEIPPTTPSMTKRLILSYIAKIFDPLGLLGPTII IAKMFMQQLWALKIHGKAYDWDSELPSHLQHEWSKFHSTLSSLRNLTVPRYISQCTATSLQIHIFADASQ LAYGACCYIRAESMEGVTVQLLTAKSKVVALSNSHSIARLELCAARLATLLYEKVQQSLKISATTICWTD SMTVLHWLNSAPNRWKPFVANRVAKIQHTAGIQCWKHVPGSDNPQADDISRGLTPEKLLVCERWWHGPHW LARNSEEWPQNTPSPSEDESAEEEKLSSRVASTALICEFRNSLFSRFSIYHKLQRVVAHCLRFIQNAKRR VGNKVHAKDIPPLTVDELKAAELKLCYLSQQDTFSEEIQHLQKGKEIPKNSKLKWISPFIDTQGILRIGG RLSNAHLSESEKHPVILSSKHPLSALLAVSIHLSKLHAAPQLLLTTLRQSFWIIGGRNLCKSVYHSCHAC FKAKPTLIKQSIADLPTSRVTPTRPFSVCGVDYCGPIYIKQTIRNRSPIKAYIAIFVCFSTRAVHIELVG DLTSTAFINALRRLIARRGQISELHSDNATTFKGAAHELNRVYKMLKSDEHDRAAIFDWCAMNHMKWKFI PPRAPHFGGLWEAAVKAAKKHIVRTIGTTSITQESMLTLLAQVEQCLNSRPITPLSDEPSDLEPLTPGHF LVGGNLQAVPIIDYTETPSNYLREYQLVQKHLQTIWARWYPEYLQQLQARAKYCNGKSAVLKENTLVIIK EDNVHPTSWPMGRIVAVHPGKDDVVRVVTLRTASGKQIVRAANRLAVLPNPDVISNLEQKETTGTE
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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