Repbase Reports |
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| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 45 |
BEL8-I_AG |
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BEL8-I_AG is an internal portion of the BEL8_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING finger; reverse transcriptase; integrase; BEL8_AG; BEL8-LTR_AG; BEL8-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V., Pavlicek,A. and Jurka,J. |
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Title: BEL8_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(3) p. 45 (2003) |
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Abstract: BEL8_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL8-I_AG, an internal portion of BEL1_AG is flanked by BEL8-LTR_AG LTRs. The BEL8-I_AG consensus sequence was reconstructed based on multiple alignment of 12 copies; they are less than 1% divergent from the consensus sequence. The consensus sequence encodes one 1742-aa BEL8_AGp Bel-like protein. BEL8_AGp is composed of the putative peptidase (pos. 125-261), RING Zn-finger (pos. 320-389), reverse transcriptase and integrase (pos. 1427-1596) domains. BEL8_AGp MPAQPLILSSRRTILIAILARYEEFLQNYQPDRDSIEVETRMAKFDQICKDLENLQQQLEDSATTAEEMT HNAALREDFERRLIRVQSALKAKYREIPRSEVSQQGAGRNPLQGIKLPTIALPEFDGDYMQWLTFRDTFE CLIHDNVDLPPIQKFHYLRAALKGEAAQVIEAITISASSYELAWKTLAERYSNEYLLKKRHLQAMFGITP AKRESATTLHQLVDEFERHKKTLNHLGEKTDGWSSILEHLLCTKLPSNTLRDWEEFASTNDNPSYDSLIA FLHRRMRVLETLLVNKPEPSPIETPIPPRRTIFPRTASFATTDRDVNKCPLCNMPHTITKCQRFNAMNPA QRYRKVLDARLCLNCLRDNHRARDCSSQYKCRHCNLAHHTMIHTESTPSTSSTTFPMLAAQDEPSHTTHA TDDHTASIQRSYAAAIKQSPSQILLQTALLNVTDAHGILHPVRALLDSASQPNLMSNRLAQRLALKGSTV NITLKGAGLSTRTVRRSVRAQIASRVEHFDLDVDFLIVDKVIADLPAHDVSTRGWNIPSEFVLADPQFDK SAPIDLILGARHYASFFTNVKSHELAPNLPTMLNSVFGWVMIGPTSPQNPASPTDCTAASTIVCMASLEE SLERFWKLExLSVNDSYSPDERRCETLYKETTQRDESGRYIVRLPKQTDFTEKLGLSKTTALRRFELLER RLERNPQLKEDYHAFMKEYLELGHMSLMNKDSGDERAYYLPHHPVFKASSTTTKVRVVFDGSAKTSTGYS LNDILCVGPIVQDELLDIVLRFRTYQIALVGDIAKMYRQILLHSDDRRLVRIFFRFSPQAPIQVYELNTV TYGLAPSSFLATRTLIQLADDEGTEYALAPAALKRNFYVDDFIGGANNVREAVQLRKELSALLAKGGFEL RKWTSNNLSVLSGLSTEYIGTHSSLHFIPNETVKALGISWKPESDELCFESNTEADEATSTKRSILSSIA KMYDPLGLIAPVIVRAKMLMQELWLLKSGWDEPVPNHICKKWKAIQSDWKTLSEYRTNRYALLPDATVEF HTFTDASEAAYGACVYARCENAAGEVRISLLASKSRVAPLKRVTLPRLELSAAVLGAHLHHRVKEAMQIV CAESFFWSDSTVTLKWIASPPNSWKTFVANRVAEVQHYSHPRQWRHVPGTSNPADLVSRGMSAAHFTQNQ LWNNGPDWLVQPSSHWPSSDPEPSDEADLETRQVSAALVCTQTHPWFGISSSFTRMVRIIAYCIRFVRNT KQKARSQRPIPHTNASKTITPKYVDAAKTVLCRLAQQDAFSAEIKQLKKGEALMKQSPLRKLTPFLDTEE VIRVGGRLNLSQLPYQSKHPAVLPKNHKFTRLLAEDYHEEMKHASGRLLLSRIRELYWPLDGRRLVKSIA RNCFRCIRQDPALARQPVGQLPPSRITPSRPFSVTGVDYAGPFYLKPAHRKAAATKSYLCVFVCFATKAV HLELVGDLTTAGFLAALRRFTSRRGLPAHIHSDNGKNFEGAERELKELFELFNDEQHRNTVATRCADRGI TWHFNPPKAPHFGGLWEAAVKTAKRHLYRHLGNTRLSYEGYCTVLHQIEAAMNSRPLLPLSDDPNELAAL TPAHFLIGTSMFAVPEPDYTQLKSCTLDDLQKWQLLVQRFWKHWATEYLQEMQKCYASGGSNNSNILPGR LVILMDESLPTTRWPLARIVKIHPGEDKIVRVVTLKTAKGIITRPITKICVLPLRTDSENHV
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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