Repbase Reports |
|---|
| 2003, Volume 3, Issue 3 |
| March 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 39 |
BEL16-I_AG |
|||
|---|---|---|---|
BEL16-I_AG is an internal portion of the BEL16_AG LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 31-Mar-2003 |
Accepted: 31-Mar-2003 |
||
|
Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; peptidase; RING Zn-finger; reverse transcriptase; integrase; BEL16_AG; BEL16-LTR_AG; BEL16-I_AG |
|||
|
Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Kapitonov,V.V., Pavlicek,A., Drazkiewicz,A. and Jurka,J. |
||
|
Title: BEL16_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
|||
|
Journal: Repbase Reports 3:(3) p. 39 (2003) |
|||
Abstract: BEL16_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL16-I_AG, an internal portion of BEL1_AG is flanked by BEL16-LTR_AG LTRs. The BEL16-I_AG consensus sequence was reconstructed based on multiple alignment of 18 copies; they are ~1% divergent from the consensus sequence. The consensus sequence encodes a 1736-aa BEL16_AGp Bel-like protein (pos. 231-5438). BEL16_AGp is composed of the peptidase A16 (pos. 145-304), RING Zn-finger (pos. 335-400), reverse transcriptase and integrase domains. BEL16_AGp: MSVSEDFAGFSDASGSNNTMQYTQAEDLDMIILKRERDRVVQSLTRIDTFLAQYKESDFPELTPRLDLLN ERWREFQALARNIGAKDYSEDNDVLYGEIEDKVMLLKGKLLGKLRAGAEIPSVKQERVCDDYNSVRLPQL TLPQFSGKYDEWLPYHDMFVVTVHENEKLSQVEKMLYLKGSLKGEALKVVDTLQACNSNYDVAWDALKKR YSNEYILKKRHVNAMLQWPRMKVMNTVGIHGLIDCFERNLQILKQLGEVTEQWGCLIIQIIISKLDESTQ QKWERHVEESEQKTVTDLLNFLRTQTRIMDAFAVDRPMAAGKSTSERRVASNVAAEAKCAKCDGSHMVEN CDSFRSLTLPRRREVVEAKKLCLNCLRQGHFQAKCWSRARCNICNRKHHSLLHGENVSETIGPSVREELP STSGTQNVVVNASSNRECTSVLLSTAIVSVRACGNKWLSARALIDSGSQVNLMTKGLAARLKLPQYESKT ALSGVGHSKVDITTSVTTVIRSKSCNYQERMQFLVLPRISSYRPVTGNQISRQNLPMNFVLADPNFDSDA EVDLLLGSEFYATFLKPDNRGKIRLELPALPTFISTVFGWVATGKVPLASEGSNYVTCGTCTRLDDLIER FWIIEEIREPLQHSQEERDCEAHFVQTHQRDSEGRYIVKLPFKCDLQNQLGPSSAIARKRFLQLERRFNR DPWLKQKYTAVINDYIDKGILVKVAANPDSEEAHGHYFLPHHPVIKASSTSTKVRPVFDGSASTDGGKSL NDLLMTGPVIQENLLALLLKFRMRSVALVADIKQMYLQVKVHPDDTRFQRVLWRGSSVESIEVYELQRVT FGLAPSSFLAIRVLQQLAIDEGENFPLARQALLEDFYVDDYIGGASSEEEAVRLQAELTLLLRKGGFHLT KWNSNKPDVLSSVSAEDRATSNVKMFEVPEEPIKTLGIAWLPESDQLYIDSNIQMNNESWSRRKVYSLVA RIYDPLGLVAPVTSWAKINMQSLWLATDDWDEEIPAVMQERWYAFQSQLGLLKEVKFSRHAVVHNPVAVQ LHCFSDASEAAYGACVYVRTIGSSGEVVVELLAAKSRPAPLKRVSLARLELCGALLAARLQKVVRQALRI PDVETFMWTDATIVLHWIRAPSHSWATYVANRVSEIQELTHGYKWMHVKGVDNPADIVSRGAMPNELLAS KLWFHGPGWLQLSEEEWKKNASGVLAIPEEELLERRKSSLVAAVSSESDDWCDRFSNYDKLLRITAYCMR FIRCCQRKLDPKHKGVLLVSELAEAKIRLVKREQRIYFAAEIKELSAGQTVRPKSSLKTLGAFLDGDGLL RVGGRLHRAKAMQVCSRFPLALPKKSRFTRLMAEYYHRLALHGGPTATLSALRREFWPIQGRSLVNSVCR GCLVCFRMNPALVQQPPGQLPVSRAMPARPFSIVGVDFCGPIYLKPVHRRAAAEKAYISIFVCFSVKAVH IELVESLSTHAFLAAFRRFVARRGLPSEVYSDNGLNFQGASKVIDDFYTLMNSDSAVEDISRYAVGAGVK WHFIPPHAPNFGGLWEAAVKAAKRVLLKVVGDRQLAFGEMSTVLAQVEAQLNSRPLTPLSEDPEELDVLT PGHFLIGAPMNALPEPDVGDVPINRLKRYEELRRVVQNHWARWRREYFSELHNEHQRGKAVVELKVGQMV LLKEDGKTPHHWPMGRIAEVFPGPDGVVRVVSIRTRNGLYKRPANRISLLPFERVN
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||