Repbase Reports |
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| 2003, Volume 3, Issue 2 |
| February 28, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 15 |
CR1-4_AG |
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CR1-4_AG is a CR1-like non-LTR retrotransposon - a consensus sequence. |
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Submitted: 28-Feb-2003 |
Accepted: 28-Feb-2003 |
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Key Words: non-LTR retrotransposon; CR1 clade; DNA/RNA-binding; PHD finger; AP endonuclease; reverse transcriptase; CR1-4_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: CR1-4_AG, a subfamily of CR1-like non-LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(2) p. 15 (2003) |
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Abstract: CR1-4_AG is a young family of CR1-like non-LTR retrotransposons. The CR1-4_AG consensus sequence was reconstructed based on multiple alignment of ~50 copies identified in the sequenced portion of the genome. Given the ~1% divergence of these copies from the consensus sequence, transposition of CR1-4_AG occurred less than 1 million years ago. The 3' terminus of CR1-4_AG is composed of the TAAA microsatellite. CR1-4_AG encodes two proteins: a 349-aa CR1-4_AG-ORF1p (positions 363-1409) and 965-aa CR1-4_AG-ORF2p (positions 1430-4324). CR1-4_AG_ORF1p is DNA/RNA binding protein composed of the PDH domain (positions 3-40). CR1-4_AG-ORF2p is composed of the AP endonuclease and reverse transcriptase domains. CR1-4_AG-ORF1p: MDCAICSTTINKDPVVCIGNLPFSECNSAFHPECIKLAATCVKEVARNRGLCWMCEKCRDSRSDLFSSIS CLMNTLKDELKNAIRSELDQRISQLDPNRVMPQEREKIAPTVSTISLTDKTFHTSTDTPMSPTPTPVKQN SLPHSQSRMLSDNEHINPTQAILHTGTANDHINTDTIQFIPAPEPKVWMFVTRIAPTVTEENMKMFILGR LKCTDCSVKCVIPRGRVTSSLKYVSFKIGIPSEFGELAFSPSTWPCGFVYRQFEFHQRTQKQFTPTLPVS CFPASNNSTARSFSTTNFMHNDVNCINVIPPTHTTQHSPSPSHHLKNANSPETHLTQNNSSGSTFLSQH CR1-4_AG-ORF2p: MEPVLNTFNIFYQNVRGLRTKTSECFANTAIADWDVIVLTETWLDDSFPSELLFDNNRFNTFRTDRSAAN SNKCRGGGVLVAINANYASSLCSTNTSTIECLWVRVKVLNVSLIIGSFYLPPDQSANMDTINAFCNSLHL TREKYKNDFFILFGDFNQPNLKWDINGKFPTLNLMLTRLSPTSQALLDELSFEGLRQLNTVLNHNNNMLD LVFANDKVTDYMRPIELCIESIVEPDGHHPALLTYFTLPQYSVPSSKPPRQADFNFRRTNFTDLVSALNQ INWDSIADHDDINDSVAEFSSQMNELYEQFIPRFNVRAHPPWTNSALRLAKRRRSRALKKLHRLKNSTNQ INFARASKIYKQLNRTAYANYVRKIEINIKRHPTSFWKFAKDKESCGRLPSSMQFEGNTITGDEEFCNAF ASYFSSVYTNNSSVPSNSTSALSFINDEVNLCTPLINDDEVESAISLLKLSYAPGPDNIPSAILINCKAA LIPILTKLFNKSLQSKCFPRLWKSSWMFPVYKKSDKSNVCNYRGISMLCACSKLFEKIMSRHMLQAFSPL ISNVQHGFMPKRSIETNLIYLLNFCHSYIDKGLQVDVIYTDFCAAFDKVNHFLLLSKLSKYGVHTNVVEW LRSYLTDRCINVKIGTSLSATFHNLSGVPQGSILGPLLFIIFINDVVFAIPHVKLLLYADDLKMFLPVKY SDDCEMLQDSLNYFSAWCFNNEMLLNVSKCSCITFSKKKNPIIYNYKINEDSVPRFSQVRDLGVILDSKL SLSSHYQTIVTKALKLLGFVLRVSADFKDPFSLKTLYCSLVRPILEFASVVWCPHQITYIDKIEKIQKKI TRVMFHRLPWSNQIPRPSYNVRCLLFGLETLQHRRTTAQITFMHKLLIGDFDAPDILNFICFSTPSRGLR SRELLRSPFRSTGFGANDPLLKMIDVYNRLGLSADFNQSVSQLRQHIQVSSRAII
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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