Repbase Reports |
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| 2003, Volume 3, Issue 2 |
| February 28, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 10 |
BEL2-I_AG |
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BEL2-I_AG is an internal portion of the BEL2_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 28-Feb-2003 |
Accepted: 28-Feb-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; PHD zinc finger; reverse transcriptase; integrase; BEL2_AG; BEL2-LTR_AG; BEL2-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: BEL2_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(2) p. 10 (2003) |
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Abstract: BEL2_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL2-I_AG, an internal portion of BEL1_AG is flanked by BEL2-LTR_AG LTRs. The BEL2-I_AG consensus sequence was reconstructed based on multiple alignment of 5 copies that are ~3% divergent from it. The consensus sequence encodes one protein: a 1750-aa BEL2-I_AGp (positions 239-5488). It is composed of the PDH domain, reverse transcriptase and integrase domains. BEL2-I_AGp: MASRRLYFVENEQGACRLCTKPDDIDDMVRCDECDRWFHASCVKVIRLPDEDEEFVCVKCxNDRAEYMxI SQSTNQDTTLKALIEALKMSGLTSSTHIKRMTLNSLPNFNGTSKDWPKFKRAFEETTEEGSFSNVENLNR LQHALKGEAERCVRRLFLEPDNVPIIMKKLEEQFGRPEQVYQDLLGEVLKVRVENQMKIPDLSDALEDMI INLKAIKKEGYLQDHxLVDELIFKFSTDKQLKWIEFKSSLEKxNKIPTLEHFSEWLYPIAENIRKLPKRN ERFRQPLNFHRPQFSPNQQRPAEINNNRPMNRPPQPHNSHPMNTQTRPFNTRVRNVQRFFQPCPCCQGSH ALYRCERFKNIPVHERLEIVVNSQQCQACLTSNNHSQNNCNAARECGIQGCRETHHQLLHTGDTVRMNYH QTIQNVYYQIVPVVLRNNNHTLETYAFLDAGSSLTLIEENTANKLHLNGVTDPLTLTWTQNLSVQENCSR RVSCMIKGVNEKKEHLLNGIRTVKNLQLPSQTLSGSILAARYPHLKGIKLSDYQKARPTVLIGLNHSHLL MPLGRKMGRPEEPMAIKTKLGWLIFGIDKICLSETNHLMIHKSEDLMTEMMRRYFSTEEFGVKPVKTVKS QALERAETIIEKTLKKTDGRYEVGLLWRDDDVILPNSYSNALRRLATQEKQLAKDPGLKNWLCKTFEEYQ QKGYIRKLTKEELKRHSQKIFYIPHFVVVNKNKPIPKPRLVFDAAAKVNGVSLNSLLLTGPDEMASLFGV LLRFREGPICVCGDIKEMFHQVKIRKEDQDAQRILWRDGDSTRTPDTYVMQVMTFGATCSPACAQVVKNR NAEANSEMYPLALEPIRNQHYVDDYLDSFFSMEKAIKTVTEVIQVHENGGFHIRNFISNKRELMEAIPQE RHQVKAIVDIKEKDSCVEKILGVQWNTQLDCFGYKVDVGRINLEKKPTKREALSFVMSAYDPLGLISHIT IQGRILMQSINAATNDWDTQIPDSLHGKWIEWLKMITSVKDLAIPRPIVASIMNPVEIHTFVDASQEAFA AAVYARSNFNGCFVVRLVAAKSRVAPTKALSIPKLELQAAVLGARLTASVIKELRLKISRTIFWSDSKTV LAWINSEHRKYEVFVSHRVSEILDTTSANQWRWVSTKDNPADIATKITSNSWTWYNGPQFLQEHERDWPG VHEVAVEQHLVTVHKETIAPEYYFSSWDKLLKHQTVMKKYVDFLKNRSNFSRTISYRDMETAKLSLLRKA QWEGFPEEMEALEKRKEISNKSSIRTLVPFLDEKGILRSRGRLENASCLPYSARLPIILPQRSRVVKLLV RDYHEKYMHQADNVVIGVLRQNYWIINLRTVLKNVKSCCQRCILNTAAPKAPLMAPLPTYRTHPYNPPFL HTGVDYFGPLDVTVKRSTEKRWGAIFTCMSTRAVHLELAEKLDTDSFMVCLNNFLHRRGKITHLYSDNGT NFVGAEKELKKIVEDIDLRMGREAALKYKIEWKFNPPAAPHFGGSWERLIQNIKKALRHMVTEWKTRHPT PETLRATLIQIESILNSRPLTHLPLTSEEEEVLTPFHFLIGRGVDSLPAPTETSQVDRQQFRLAQHNAKT FWDRWKKEYLPTLIKRNKWTCKVEPIKVNDIVIITNDNAPPGQWLKGRxVETATAPDGQVRSVSVKTVQG VIKRPAVKVAVIDVKQKEHLLFVKKPPHSPTKRKVLSEENLQKVPPKKRMIAPCNWAPKLVQQLKKEDDV
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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