Repbase Reports |
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| 2003, Volume 3, Issue 2 |
| February 28, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 8 |
BEL1-I_AG |
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BEL1-I_AG is an internal portion of the BEL1_AG LTR retrotransposon - a consensus sequence. |
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Submitted: 28-Feb-2003 |
Accepted: 28-Feb-2003 |
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Key Words: LTR retrotransposon; Bel clade; 5-bp TSD; PHD zinc finger; reverse transcriptase; integrase; env; BEL1_AG; BEL1-LTR_AG; BEL1-I_AG |
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Source: consensus |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: BEL1_AG, a family of Bel/Pao-like LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 3:(2) p. 8 (2003) |
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Abstract: BEL1_AG is a young family of Bel/Pao-like LTR retrotransposons. BEL1-I_AG, an internal portion of BEL1_AG is flanked by BEL1-LTR_AG LTRs. The BEL1-I_AG consensus sequence was reconstructed based on multiple alignment of ~20 copies. The consensus sequence encodes two proteins: a 1771-aa BEL1-I_AG-ORF1p (positions 1204-6516) and 502-aa BEL1-I_AG-ORF2p (positions 6452-7957). BEL1-I_AG_ORF1p is composed of the PDH domain (aa positions 13-54), reverse transcriptase (aa positions 745-900) and integrase (aa positions 1421-1569). BEL1-I_AG-ORF2p is a putative env-like protein. It is distantly similar to the env-like proteins encoded by Tom and Ted retrotransposons from Drosophila ananassae and Trichoplusia ni, respectively. Some copies of BEL1_AG are nearly identical to each other. Therefore, BEL1_AG can be still active. BEL1-I_AG-ORF1p: MDIIFKSNPKGNCKLCKNPDEWDTQVNCIECDRWLHLKCLKLEGPVKKYVCPKCYTIAEERKGNREALMQ TERLLKEKTEAEKRTREENERCEKEIERLEDILRNEEIHNQSDTTHLQDDLQTLTTNVNKMANLGFAPHK KTVLKLPDFYGNYRTWPRFKLLFEETTRTEKFSNLENLTRLQIHLKGDALRSVSGLMLNPSNVDAILERL GRLYGNPVSIFNALLKDLMVVKRASLENPSSIIEFCNALNNMVENMTMLNQTEYLMDQRLLTDLVAKLSP DLKTRWLRDSLNEEGDKIKTLKDFSKWLKPTEDVAITLLAMEGGQRDRPARLNTHYSASHQISNKGCLIC SRPHETISCYKLKNASVNERWKMLKEKNVCTNCCKFSNHAAINCRSRPQCTVDGCGRRHNTILHEEKFNS MGAASKAHLNFHQNSEQYLFQVLPITVYNENNSIETFALIDPGSSTSLMTESLRQKLNLHGPRKPLTLSW TNGCNQVEDTSTSVSLKLRGPNGRLLYVKDIRTVKELDLPTQSINANVLKRKFSHLKTVNISSYKNAKPT ILLGLPHAYYTQAVESKSGAPNEPVAHKTRIGWVVFGKCRDGDAKENQHLFTIQDKKEEEEKSMRDLMKR FFSTEEFGVRETKFTPKSKDHERALSVMNDTLKYTNNQYEIGLLWKDPNVSLPSSYAQALRRLESQERKM KGNDEMKTWYKNQITDYVQKGYARKLTPFELLNRDPKINYIPHFMVINPNKPTPKPRLVFDAAAKNEGIS LNSTLLSGPDATTSIFGVLIRFREYPIACSGDIKEMFHQIRIRKEDQVAQRFLFRDNPRNEPQVYVMNVM TFGATCSPACAQFVKNENALKYKDKYPTAVEAIVKNHYVDDYLDSFRTINDAIKTINEVCLIHDRAHFFM RNFVSNCQEVIRSIPDDRSSQQELLHISNKDMNFEKILGQYWDKTNDVLRYKLKHTPCSIISKREMLAYL MKIYDPLGLAANYTTQAKVIIQEIWKTELDWDSPVPERIMEQWQRWKERIKELEHIQIPRCYSVASNIEV TELHTFVDASEKAFAAVVYLRTLTEKGIDVNIVAAKTRVAPIKPLSIPKLELQAAVLGVRLAETVKEELR ITTDRDYYWSDSKTVLGWINADPQKYKQFVAVRIGEILDTTNASQWKWVSSESNPADEATKVVTRKSIWL NGPVFLKQREIEYRDPKLIITHEEIRPNLMIKTIEKRTFNFIKTEWCSNWLRLKRSLAINLKYIEFLKSK VKRLAFSPIVEKENLDKAEKLLLQKAQWEIYEDDLVQLSLNGQVSKNSTIKNLNPQVIEGLLRARGRLAN ICYLSDDVKQPIILPKRHHVTELIIQHYHERYMHKKMEAVIAAIRQRFWVIDLRAVVRSVISKCQRCKNE RARPIAPMMAPLPESRAAVFKKPFTHTGVDYFGPMTVSIGRRVEKRWGAIFTCMTTRAIHLEIAKDLSTN SFIMCLKNVQHRRGKICHIYSDNGTNFVGANRQITELVERCATNGIKWHFNPPAAPHFGGVWERMVREVK SLLPNNDNMPEEVLRSAFIEIEFILNNRPLTHIPLETEDDEPLTPFHFLIGCSGEAEPTPAGISAAEASR NNWKKAQVITQNYWERWLKEYLPTLAKREKWIERSDPIQPDDIVVFPDEQRVGRWLKGRVVEVYPAKDGQ VRSAKIKVENGEYKRPVINLSVLEVKGKKIADVPSWGVKRPVNIAYVKKLAEQLKTPPAKRRKHLVKPYN GPVSMHYKPVSRMETNRQSFS
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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