Repbase Reports |
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| 2003, Volume 3, Issue 12 |
| December 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 207 |
I-1_AN |
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Non-LTR retrotransposon from the I clade. |
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Submitted: 31-Dec-2003 |
Accepted: 31-Dec-2003 |
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Key Words: Non-LTR retrotransposon; I clade; endonuclease; reverse transcriptase; RNaseH; zinc knuckle; I-1_AN |
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Source: consensus |
Organism: Emericella nidulans (Aspergillus nidulans) |
Taxonomy: cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: I-1_AN, a non-LTR retrotransposon from Aspergillus nidulans. |
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Journal: Repbase Reports 3:(12) p. 207 (2003) |
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Abstract: Non-LTR retrotransposon. I superfamily. I-1_AN is a non-LTR retrotransposon from the I clade. This family was active during the last one million of years, or so. Some copies are less than 1% divergent from the consensus sequence. I-1_AN encodes two proteins: I-1_AN-1p (pos. 103-1583) and I-1_AN-2p (pos. 1581-5141). I-1_AN-1p is a putative DNA/RNA-binding protein similar to the ORF1 proteins encoded by non-LTR retrotransposons from the I superfamily. The protein includes the zinc knuckle-like motif (pos. 360-425). I-1_AN-2p includes endonuclease, reverse transcriptase and RNaseH domains. I-1_AN-1p: MEVDISPPGGTRPATPLLGENSDPPSGPTTPTPLPRNSLKRRALFSPQKTPTAAPVPVSHTPQAPSICEQ VGMVADDQLALLHDWKLAMTSLAKALDLTVSSLQGRPRDLARELAARFVTLAKQDSPQQISQMPVVAPPQ PPRQMEQPNHPPTPEASKSPLNRQTSQPTTWASLTAPRTGQGNWQTIAPEHHMQAKQTAQRRLKQSNKTD HRIFLRLPASSSLRAIGPHGIRVTLAGKVPDGITQVQVISTGYAITTTEQGKAFLLSEKAASLAGDGYFE IPTEYHQVIVSRIPKQLWSLDGWIDTTIADISMEAERITGIKPLMAKLSKHPVERDSITAVIAFPKKLQH PLQLFGLSGLSRPTRPKQRPLQCTRCHRFYDTRACRSSERCISCGSSKQEHNCRVQCINCCGPHAADFQK YPARPHIQRNTITRLSKDALAAICKAGRLAFQQEQKKAEESSKQQTDNTHTTNQPTRQLTQELLNQTLTS PEL I-1_AN-2p: MKILQANIGRGGAVYDLLLSFEADIILVQEPWTNTAKHLTKTHPQYQLFSPPTRWTARPRTLTYVQRDLP AHSLPEPISPDITTIYTAGLTIINVYRPPNNPVAPAGAGSTPSTLSTLLGYAPPENTILAGDFNTRHPFW QPDTESHAVTPGATGLLDWLDAHELELRLEPGTPTRGPNTLDLVFSNLPLRALVEDHLKTPSDHATIGII LEQEEPPPIYKLGSTNWEKARALASPPDPTLPIDLLAKQLVQISQLAIQGASRYNTRRLPRTPWWTPELT DILHQTRQQQNPDYKQLRKAIVQAKAEYWKQRIEQATAPIDAFKLAKWIQYPDQLAAPPLNIQGAQVTTP QGKADAFLNHLLEKGALLPNQTEEGPPNKPLGLLHLPTKEHCWAALCAPPPSAPGEDGLATTAWRELWPV LGDTITQLYYRCMEEGCFPLSLKSAKVIMLPKPGKRGYTQLNAWRPISLLSTLGKGLERLLAQQIAVRAI QADVLAPCHFRALPGRSAIDLVQVLVHRVEEAFQQGKDASLLLLDVKGAFDAVIHQQLLSHLRLQGWHKG LLQLLKDWLTGRSVSVHIKEGTATAPIKGRLPQGSPLSPILFLLYAARIVSTLEGSFCYADDMGILLTGN TLEESSQQLVEAYKQITALGTETGLPFSIEKTEIQYFSRKQQQHLPTVTLPGIGEITPSLYTQWLGVLLD TKLTFKAHINLVFSRGKRLAQHLKRLSNTQHSCPVASMQAAVIQYILPTALYRAEVFYTGKRQKGVVNSL LSLFCTAALAIIPAYKTTPTAALLREADLPDPEALLNSILQRAAVRYMSLDTKHPIAQIAAETTAGRPKT RLKRILQLLLSPLPERAIIELPLPPLCMLPTDNKGYSPAPLQISVYSDGSRTSQGAGYGYAIYFGPILVT KGHGPAGPRTEVYDAEIMGAVEGLRAALGQPCVGYSTQLVILLDNLAAASLLASYRPTPHRHGLSETFSQ LAAQWMESPSILTMQRKPLQVRWIPGHSGIAGNELADKLAKLGSSIYSPDIPPSPAYLQREAKQWLRTET YTAYANKAPETYKALNIRPHTKESRSREHKLPWWVLGRLVAARTGHGDFTAYHQRFNHSDYLESCSCGRT KTPVHFFFCPYTRKRWKDRWRCIRDGPSKTIDWLLSTAAGAEEFSRIVQESSFFKDICPNWARRSA
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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