Repbase Reports |
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| 2003, Volume 3, Issue 11 |
| November 30, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 199 |
copia-2-I_AN |
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Internal portion of copia-2_AN LTR retrotransposon - a consensus sequence. |
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Submitted: 30-Nov-2003 |
Accepted: 30-Nov-2003 |
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Key Words: LTR retrotransposon; internal portion; copia superfamily; copia-2-LTR_AN; copia-2-I_AN |
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Source: consensus |
Organism: Emericella nidulans (Aspergillus nidulans) |
Taxonomy: cellular organisms; Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiales; Trichocomaceae; Emericella |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: copia-2_AN, a family of copia LTR retrotransposons in the Aspergillus nidulans genome. |
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Journal: Repbase Reports 3:(11) p. 199 (2003) |
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Abstract: The 1412-aa copia2_AN-Ip polyprotein is encoded by ORF1 (pos. 187-4422). copia2_AN-Ip: MPPKASRGTKSNDVPFQMTTRHRTYEPETPVSADNQISNDSTDEDQPDEPTTMEDMRAGLLRQLRDELRE ELREEMAQQLRSEIRHEIRAEQQHQSPTQQLHQEINQNASYGRNTDIQQRDLIYCEKQDIRKLAKSKFGT QASILLNGRSNYTAWRDSMLMDTYMIEAKDILDETKPPDGSNEIDIARWETKNEILHTRILQSTARHVRQ TISWKGSTLASELWARITSTYGLSMAEERLMTVKALLDINPQGNYPAMVRDFQRIAAKIKEMKLSLDDVI HDIFICSLGQWQQNFVRTKLDEFYSCGRGPIKNLDIDTFADQLVARSSSSNNKYIPQEPQEFKLEPRYRI ILTEPKDSSRTKRDGQDQKPARTKTLCQACGKGYHKPDDCWTLHPEKAPKRHGNQASGTSNDNKNQQPTG QELVLRNHPQANSIAIVPAKEPENDEEPQWLLDTAAAFHISNKYHVFINLRGHKAYINDAGGRTHQIIGI GTALVYGVEIPDVRYAPTTTADLLSFSQLDDQDFDVSTQGTVNKKHFYITSPTGASLDAFKEQNTCLYQI KPVAYAIQPILHAKDTQKETNNIIPTATMEEWHQHLSHVHLQAILKMAQQKIIKIKGPKTLAFCDICRQA KERRKSTKEPASRATKILVRIYIDIAGGGAILDCKDKQAPPGIRNIRYFLLITDDATQYQWVYTLRTRDE AIPTFQGWLEHIKNQGYSPPAFVRSDREFLTEHVKKLCQTYGLIWEPTAADSPWQDGVSERGIQTVLQYT RAMLYDSGLPRWLWPQALQTAVYHMNRLPTRVPLYNDRRPMAPTSDPEIQPCAHFTPYSAWTNGDTDIKH LVKFGSPAWMHLHGASKYAGKPTSKIDPKAKKVHVVGYQGRHIYVIWDPEINQLRDTSDISIKEEFNPPQ SKPYEAAKAPEAAKALETVKPGETAEAAEPKTNEDLLIQDISDITSREELYRPAKGFAIQKSVESPLPEP KSYNEAIKGPESAQWHAAMQEEINTLKQKQCWDLIRKSDMPAGARAIPGRWVYKKKLNPDNSIRYKAQWV IRGNLLDKSEFEGATYAPVVDPITSRILFGVSAQKGWHIIQADAVLAFLNAKLKGQPIYMHQPLGFAEGE PGTLVCLLRQSLYGLTPSARLWYDDLRAYLESIGFKVSPHDPGLFVHVTEKLYITTHVDDFMIVGEKAQN AVQALESLKSRFEIKEAPEFKRYLGMNIKTTPTGIHLSQEDQIDDIINSFRLHNAHPTKSPLDPGTVIDD APDPKINIKEYQHGTGSLQYLATKTRPDISRAACFLAEFNTAPTAKCWAALIHIIKYLKGTRSLGIRYQH DPAANIKPPKAFSDSDWGGPHTKARRSVGRYVFKLAGGPIAWQSKRQTCVATSSNEAEYIAASEASREAY WIYSPQTSKDRQKFIKIQRLAKL
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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