Repbase Reports |
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| 2003, Volume 3, Issue 10 |
| October 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 187 |
Penelope1_CI |
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Penelope-like non-LTR retrotransposon - a consensus. |
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Submitted: 31-Oct-2003 |
Accepted: 31-Oct-2003 |
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Key Words: non-LTR retrotransposon, Penelope superfamily; reverse transcriptase; Penelope1_CI |
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Source: consensus |
Organism: Ciona intestinalis |
Taxonomy: Eukaryota; Metazoa; Chordata; Urochordata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Penelope1_CI, a family of Penelope-like non-LTR retrotransposons from the sea squirt Ciona intestinalis. |
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Journal: Repbase Reports 3:(10) p. 187 (2003) |
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Abstract: Penelope1_CI is a family of non-LTR retrotransposons from the Penelope superfamily. Penelope1_CI encodes a 604-aa Penelope1_CIp reverse transcriptase (pos. 1-2531, conceptual translation). Penelope1_CI retrotransposons usually are 5' truncated. Therefore, the consensus sequence is incomplete at its 5' end. Penelope1_CI is represented in the genome by approximately 1000 ~1kbp long 3'-end copies. They are 5% divergent from the consensus sequence. The ~200-bp 3'-terminus is often repeated and forms a palindromic structure. Penelope1_CIp: MAWQIESSTGETLSNKDWVMNMSDKELTPAQSVLSLGLNFAVSPDNVPWKQIVASIEKGLVGQPLHIKSL LQSKLVGCIRSHKTTTTNVPKSYLAAIRELQXKDRSIVILSADKGNRAVVMNRTDYTAKLLELMKDARTY KKLARNPTPSLERKVNNYVXRLHREREVLSYSEFRQLHCTDGRTPQLYGLPKVHKPDIPLRAIVSFIGSP SYMLAKFLAKIVAPLIGNNSHHVRNSHEFAAEVRDMTIADGECLVSFDVVSLFTNVPIPLAMLVSGCVLT LHVLRFRVHSTNKCFGTAMGGSPISVVIANVVIETIEEDALATFMHPPRYWKRYVDDTFAIIAAEQLHPF LGIEESIQFTLERENEGKIAFLDVEVSRDEEGGMKTYVYRKPTHTNRYLSFWSAHPIEHKKAVVRSLKHR AEALVSDPLRLQDEMKFIKDGLRYNSYPPWMVKWKPTQKPKEVTPTIATLSLPYVPGLSDTLKRECLPIT VLRFNSKPHTTLRSLLSHPVENQATEPKGVVYLIPCGDCEEGVYIGETGRALKTRLKEHRRDVAAKDASK TALSKHSAVCNHRVAFENVQILERETDLTKRLFLETLHIHKHRECVNNKEQCTYFPTVYNNLI
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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