Repbase Reports |
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| 2003, Volume 3, Issue 10 |
| October 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 186 |
Harbinger4_TP |
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Harbinger4_TP is an autonomous DNA transposon - a consensus sequence. |
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Submitted: 31-Oct-2003 |
Accepted: 31-Oct-2003 |
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Key Words: DNA transposon; Harbinger superfamily; transposase; DNA-binding protein; Harbinger4_TP |
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Source: consensus |
Organism: Thalassiosira pseudonana |
Taxonomy: Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Harbinger4_TP, a family of autonomous Harbinger-like DNA transposons from diatom Thalassiosira pseudonana. |
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Journal: Repbase Reports 3:(10) p. 186 (2003) |
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Abstract: Harbinger4_TP copies are ~95% identical to the consensus sequence. They are flanked by the TNA 3-bp target site duplications. This transposon has 40-bp terminal inverted repeats (1 mismatch). Harbinger4_TP encodes the 442-aa Harbinger4_TP1p transposase (pos. 298-1570) and the putative 624-aa Harbinger4_TP2p DNA binding protein (pos. 3563-1692). Harbinger4_TP1p: MLLSTSQASIVRDLVMASKQNNVRGVQLNKCTNVWGISTSVVHTGCLGFPFGNYMISCVTRIEKSIAEAA KIRKDARKREKRKRGVGRSNYLNPTPPPPPNGMISTSVRLACALRYYAGRSVYDIMSSYGISHTELFESV WYVVDAINKTTSFDIKYPQNHEEQKKIAADFKAVSEVDFDVCAGAIDGILIWTLKPTLEDAKAVGVDQMK FMCGRKHKYGLNCQAVCDVRGRFLHMSITCGGASSDLVAFEGSALKKQLDDGLLAPNLCLFGDNAYINSQ YMVTPYPNTSGGAKDNYNYFHSQLRIRIECAFGMFVQRWGMLRMVIPRNISVPKTISLVLALAKLHNYCI DEVDAEPSTILAQDEQNITENENGSVLLIHDNQIAEVINVNTTTPQDLIGGGDHFDDVPRYFRRGLQNDD SRTRLCNHVESTFKTRPRRRQS Harbinger4_TP2p: MSAADDQNTAITTPERRNNSGILPSDAGRTAGWGWGSAIRSLVTNNPTTPTTATAAAIITTTAATAATTQ PAATTEAGHFTESPSVTSLVADAADGAATSFVMSLSDVLSLPDDQCKAKVVYVKNNRSFKVLVAMSRGLV DEAGELLFDENVEPWCKLNPREWQASRDELAAEITRRWEDYVAKVDGKPRPKQWKKSAMLEWLINNPIAT LGDGDGTTRDADCMFLRYQMGEMKKLRTDAIDALAQQQTLLEGNWVGPDPIIRLFHCIIDHAHIMQKFLT RLQSMSRLSLENRNSDLCRDISVWEDVSNVWNDPQYTPTTEIFNNNLQPREIPHSKVATLAKATPEKCES KFNAVVLNLRRIITMWERSGQGEGGFLHEEEGTQLGMNDFGSLTGRTENALSNRTNFVGEKDKHFLYLWD LIDKYDLLKTCMQVFGPEFAAASGDNVRVIYDAKRAQLKEDEDDDASSMSSKQTKSEMFIGGSIMKLANN NVMIAQINAQEKEKDRQEKEKDRLAAEELHKKQIIEREKDRILQQKQSLEMEVSRLRQDKRAYLLQMSER DEKRRKSRQNIDAEGGKDCLKECIDDINGEIAEKKAKLEGLLRDETNLTTTPQKSNVTPPRTDG
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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