Repbase Reports |
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| 2003, Volume 3, Issue 1 |
| January 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 4 |
L1-10_DR |
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L1-10_DR is a non-LTR retrotransposon from the L1 clade. |
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Submitted: 31-Jan-2003 |
Accepted: 31-Jan-2003 |
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Key Words: Non-LTR retrotransposon; L1 clade; endonuclease; reverse transcriptase; 15-bp TSD; L1-10_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: L1-10_DR, a family of non-LTR L1-like retrotransposons from zebrafish. |
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Journal: Repbase Reports 3:(1) p. 4 (2003) |
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Abstract: L1-10_DR forms a separate family of L1-like non-LTR retrotransposons. This element is less than 70% identical to members of other L1-like families identified in the zebrafish genome. This family was active recently (no stop codons in ORF2). L1-10_DR encodes two L1-like proteins: 281-aa L1-10_DR1p (positions 136-978) and the 1260-aa L1-10_DR2p (positions 1588-5367). L1-10_DR1p is a putative RNA/DNA binding protein, and L1-10_DR2p is composed of the AP endonuclease and reverse transcriptase domains. L1-10_DR1p: MPPKTIKLPQHSKPSGQMEEEGKVLASKKLTEPQSEDNAATNDDILRAVQSFRDDCSKQFTDTMEAINGI KTDLLSQAQRIGAAEERISQAEEDVTALQHKVNKLEETTEFLRNKVQDLEDRGRRSNLRLIGLPEKTEGS NMCTFIENFFPTILRDEFGSPPAIERAHRVGQVNPNRPSAPRAIVIKFLNYQDKEKALRAARKMKELRYE GQRISLFQDLSAETRQRQRQFDGVKAQLRGMEIRYGMLYPAHLIVTHVGQRHVFKTVAEAEDFVRSVRTN I L1-10_DR2p: MINNSEIKIGSWNVRGLNNLVKLKQVLGRLKQMKANIIFLQETHLLKDDVSRVTKRWPGQVFNASFTSRA RGVMILIHKSIPFQLKQQYIDPLGRYIILNGTILTSHINLISIYAPNVDDPSFFQNFFFTISAYAGNYVI GGDFNCVLNPINDRSSGVDTHQQSKKTILKYMTDLNLVEIWRYLNPNKKEYSCFSNTYKTFSRIDYFLIS NGLVTKVGKSWYDSILLSDHAPVLFTIQFDNLVLPPPRFRFQASWLLDHDFVKFLDNKIDLYFLVNTNQT SASVKWEAFKAYIRGEILSYTRYRSKIYQAQLEDLGKQIKVIERHLFSNFDPSKQKELLVLKAKYNEITS SKISKNLMWLKQSYYDQGEKSGKLLAWRIKKIQTDRAINSIFLENGEKTVDPLEINNIFKLYYENLYKSE IANNLEGQNNFLDKITFPKLSEETRSNLEKNLSIEELSEALQDMCNGKAPGPDGLPMEIYKTFAGKILPH LLEMFNESLGKGILPPSLRSALITLILKPGKPPNEKSSYRPISLMSCDTKILCKALSKRIEKFIPNLIMN DQNGFVLGRQAFHNIRRVLNIVFKKQKAKDHAILSLDAEKAFDRIEWRYLFEVLERFGLGDGYIRWIKLL YNDPQAEIITNNQISKPFNLSRGTRQGCPLSPLLLLFAIEPLAMAIRSSPEIKGIIIGEREHRLSLFADD IVVFLSSLELSIQALNALLKVFGEFSGYKVNNNKSALLLLNKDEQRNYTNNRQFFNSQEELTYLGIKIVT NIKEIISINYDPLLKKVMDSLERWNAMPISMIGRINIIKMSILPKFLYLFQSIPLPLPATFFVTLKKMFT RFIWNNKRPRLRLSLLYLPYERGGLKLPNIKLYYWAAQLCSAMYYFIETDPPAWIDIEKNEITTPLQMYL YSSPVKVLKKYTNNPFLRNSICVWYEAHDFLGETIKLSSLSPIWGNAMFVPGRNDGGFKNWMYKGAKQVK DLYKDGTMMSFQQLMKEYDIPQKHFFKYLQIRSFIHSEIKTYVEPSLSTIEEHTVKHLRDKGNLSFFYNT LLEGSKESSMSYLTAWRNDLQEDISKDEWMDSCLFAQTYSVNTRCRLLQYKWLMRTYITPVKLHKFNPNI PDSCLKCKQDIGTLYHCMWECTEIQTFWKSILVMIGKLTEENVPCDPKLCLFHIYPVNFVVSASKRKLID FSLLQAKRAIALKWKEMQGPSSILWIKEMTNNLAMEKLTYAVKGKLKDFYNIWTPFLCYCNQEDLTGMDD
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Derived: Positions 89080 94787 Accession No AL772154 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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