Repbase Reports |
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| 2003, Volume 3, Issue 1 |
| January 31, 2003 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
DIRS1a_DR |
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DIRS1a_DR is a nonautonomous DIRS-like LTR retrotransposon - a consensus. |
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Submitted: 31-Jan-2003 |
Accepted: 31-Jan-2003 |
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Key Words: nonautonomous LTR retrotransposon; gypsy; endogenous retrovirus; DIRS superfamily; reverse transcriptase RNase H; phage integrase; DIRSDR1; DIRS1_DR; DIRS1a_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: DIRS1_DR, a family of DIRS-like endogenous retroviruses in zebrafish. |
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Journal: Repbase Reports 3:(1) p. 2 (2003) |
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Abstract: DIRS1a_DR is a subfamily of DIRS1_DR retrotransposons. There are ~100 copies of DIRS1a_DR in the genome, they are ~0.7% divergent from the consensus sequence. Therefore, this family retrotransposed in the zebrafish genome very recently. There is a 11% divergency between the DIRS1a_DR and DIRS1_DR consensus sequences. Presumably, DIRS1a_DR is a nonautonomous family because ORF1-ORF3, that are intact in DIRS1_DR, are corrupted by stop codons. The DIRS1a_DR was reconstructed based on multiple alignment of 7 copies.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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