Repbase Reports |
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| 2002, Volume 2, Issue 7 |
| July 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 28 |
L1-8_DR |
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L1-8_DR is a non-LTR retrotransposon from the L1 clade - a consensus. |
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Submitted: 31-Jul-2002 |
Accepted: 31-Jul-2002 |
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Key Words: Non-LTR retrotransposon; endonuclease; reverse transcriptase; L1 clade; LDR1; L1-8_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [2] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: L1-8_DR, a family of non-LTR L1-like retrotransposons from zebrafish. |
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Journal: Repbase Reports 2:(7) p. 28 (2002) |
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Abstract: L1-8_DR is a family of L1-like non-LTR retrotransposon. There are ~500 copies of L1-8_DR in the zebrafish genome. THey are ~2% divergent from the consensus sequence. The consensus sequence is incomplete (a ~300-bp 5' end is not present). The consensus sequence encodes two proteins: a 290-aa L1-8_DR1p (positions 1-820) and a 1271-aa L1-8_DR2p (positions 1248-5060). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-8_DR1p is a putative RNA/DNA binding protein, and L1-8_DR2p is composed of the AP endonuclease and reverse transcriptase domains. L1-8_DR1p: MTSKFTSKARAAKQGAMASDGPAEIREKDARLGHVTTPPGFAELQAALKAAMDEMARFSANLSTLQADVT SVKTTQFQMKADAAAMAQRLDEAEARIGVLEDENERLQQMAEKSVKECAELRDSVSDMVNRERRMNLRLI GLKEKSENGNLRECVRLILSEALDVDISETELQRVHRSLVPMPDENKPPRPVIMRFHSFLERERVMAAVR LKVREGGSIKWRSSKISLFPDMTRDVAEKRRRFTAVRKRLHELDIRFTLAYPAVIRFTWKGQRVSFDDHS KALELLSEKD L1-8_DR2p: MHGTAKYLKIISWNINGSHNPVKRRKWLGYLKSKDVDIALIQETHMMGTEAEKLKRDWVGQVFHNSYNSK RNGVAILVHKRVNFVMIKQKKDEEGRFIWLEAMVDDQKVNICNIYAPNKEDSVFFHTVNKMIGGQAGNQL IIAGDFNQVQDAYLDRTTYHKNMPRDRLAIQLMMEDLGLVDIWRLVNPREREYTFFSHNHKSYSRIDYFL VSGDLVESVVDCKIGVIALSDHAPVEMTLDTNSRTIKQNRWRFNISLLQDLNFSTKLGADLKEFFEINVG TTERLGTVWEASKAYVRGNVIQYASLVKRLNKEKVKDIEARIKVLDRQLSLKFTDSILKQVCDLKYQLND IYNRKAEYAMFRMRTAFYESGEKADKLLARQLKQKDASFLISAIKNEKDEVVTANMDINKVFEKFYSKLY EAESSPDCTKYRDFFSKITLPTLSSDQLEMLDAPIEESEIGAAIMSMKAAKSPGLDGFPAEYYKKYIDIV APILEGVYKETLLLEQMPPTFNDALITLILKKDKDLYDPGSYRPVSLENVDCKILSKVLALRLEGILSNI VHSDQVGFIKGRSSSDNLRSLLHLIWQSRNENVPVAAFSLDAMKAFDRVEWGYLTYTLQMFGFGPTFLKW VKVLYSAPRAAVLTNGIISPFFKLKRGTRQGDPLSPLLFTLFLEPLAVAIRNDIRVNGVHLGEREYKCFL YADDILLLLSNPSTSIPAVMDTIEHFSQISGYKVNWVKSEVMPVSVGCSLADVSAFSFKWIPTGMKYLGI RLSRDLYDVVQMNITRMLQNVSTNFDKWKVLNLSLWGKVNAIKMMVSSRINYISIMIPLEFPLSIFKQYN QLVKDFLWEGKKPRISMKNMFTTRIKGGLALPNIELYNTAFEMIKICKHWSGDNVEGISWIEIEKTLTFP FSVIDALSQKSLYSIMNGEVNPILEHSQQVWKKIHKIFNLSHYKQGYSSLWNNPAIKIGKKTVYWKDWCK KKGLKTVDDLYGQGALYSFQELKDKFNLVDKGDFWKYIQLHSSIRTVGYKPGAEENVLLGFLNMPKSMQT TSFVYKIAANNMYGKSDHLKIIWEKDLEVEFEEGEWEAVVSGRGGTVRDVRSKLIHYKIINRYYWTPVRL HRIGLKENNHCWKCGQSVGTFLHLTWSCHLVAPFWTRVIQNLEKWLGQPLPYSPRVCLLGDTSTLQNGIS KTQAGLVVAGYIIAVRLVLRNWKNSDTPSFKDWIELMTSTASYMNVCWQDFRIPPIPLIRNGVAFCNIWR AHKKKIEKLSI
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Derived: [2] Consensus |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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