Repbase Reports |
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| 2002, Volume 2, Issue 7 |
| July 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 26 |
L1-6_DR |
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L1-6_DR is a non-LTR retrotransposon from the L1 clade. |
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Submitted: 31-Jul-2002 |
Accepted: 31-Jul-2002 |
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Key Words: Non-LTR retrotransposon; endonuclease; reverse transcriptase; L1 clade; L1-6_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: L1-6_DR, a family of non-LTR L1-like retrotransposons from zebrafish. |
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Journal: Repbase Reports 2:(7) p. 26 (2002) |
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Abstract: L1-6_DR is a family of L1-like non-LTR retrotransposon. This family was active recently (no stop codons in ORF2). It encodes two proteins: the 299-aa L1-6_DR1p (positions 154-1050) and the 1255-aa L1-6_DR2p (positions 1710-5474, a conceptual translation). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-6_DR1p is a putative RNA/DNA binding protein, and L1-6_DR2p is composed of the AP endonuclease and reverse transcriptase domains. L1-6_DR1p: MSPQKQATGNKRLKTLDDDVASIVSHAIEAQQEALREMVFGMLTEAIKSALAPFNDYINENGTVLRAIKE EIGSLGKNMASITSKVDDLQGNLRKTKKDTNHCLSQLDQIQRKCTDLEDRSRRNNIRLVNLPAGMEGDDP IGFLQKTLPKWIPDLSGRSNPIEIDRAHRVYSNSNSNRSRAMIFRLLRYPDRQAILQGARKAKPTLPGGA RLEFYADYSAATAQKRKAFSAVRSKLQQKGAETFLIYPATLKVSFKGQKYSFETPDEAEKYIEGLERTTS APARRSLYPQLQEAMEETD L1-6_DR2p: MVNLNIMSLNVRGLNSPSKRTKFLDYLRRKNIDVALIQETHLRIADVQRLQNKHYIPIVSSGYNSKKRGV AILFKRNHTFSIENLGSDNNGRMAYCCTNIGGKKLMFVNIYAPNSYDALFFPDITKTLLAYNEYSLIIGG DMNTVMDTVLDRSNPSIPMIQPQSSKALNWFTKDLNVSDTWRLLNPNVKEYTYFSPRHKSYSRIDYILLS PMIFSCVKNIEFLPQSISDHNAITTSLQFSTLTKPSRWRFNTLLLKNEEYISQLRSELTEFISINQNSVS NQDMFWAFIKGFLRNNAISFSARLKKNYLQQISSLEKRCGELERELEKKFATETQQKLKVERATLNDLLR QRTEYLMHITKHKYYIDGSKPSRLLALTLKKHEQRFNINAIKNSEQVLTSNPSDINKTFKKFFEKLYSSE IQTNTDHLEKIFESLNLTKLSKEDADNLDSEITLDELHNAVRDLHTGKSPGIDGIPGELYLVLWDLLGHI WLQTINKAITKGHFHKDLNTALITVLPKPEKDLFECSNYRPISLINEDIKIYAKVIAKRLQSVISKLIHP DQAGFITGRLASDNVRRVLHVIAESGKLKKPSGLLLIDAEKAFDRLEWGYLWYTLKNFNFGDQFIKMIQT LYSNPLARVTTVGIISDTFCIKRGTKQGCPLSPLLFNLSIEPLAQFIRQCKNITPIQLGSSVHSISLYAD DILLFLSDLQNSLPNALTALNEFGRISGFKINYSKSVLMPLNPIGHNVTNNTNIKISTKVKYLGIELSPT LQLIPKINYMSIYSKVEADIQRWMRLPSSPPARISTIKMNILPRINFISSMLPLPPPPNYWKKLDSILNK FVWNGKRPRVKWSTLQKNKTEGGWACPNFKLYHWSFILLSVVKWFEPDMQCSWKEIEKDLIFPTRLQDFL FSGFNHRKCILRYGPILSYTLQIFKKVETYFPSRTTWHNHSPLWHNVNLLSGRQPFNQPSWANKGILTLK DINGEKSILDFQELVNKFNISPNTLFIYFKIRAALKAHKTPWGKDLHTHPIVKWIYNAPRKGTVSYLYCC LSNINAHSFSKERLWLSDMSRPNTTIDWETVWHNTFHASTNPNHQFIHFKTIHRAYLTTRIRHIIGLSPD PYCKFCEPQRPDTFLHMMWECPEVQKLWDSVLDILFKVTKICFPKDPILLLLNDNSQFPLNAKVRKFWLA ASTATKKMLVQRWKPPHDLSVKHWLHSLLEILYLELSSARINHAKVDILTAWKIYICNVKEILDT
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Derived: Positions 156757 151065 Accession No AL627249 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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