Repbase Reports |
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| 2002, Volume 2, Issue 6 |
| June 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 22 |
SINE3-1 |
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SINE3-1 is a SINE retrotransposon - a consensus. |
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Submitted: 30-Jun-2002 |
Accepted: 30-Jun-2002 |
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Key Words: non-LTR retrotransposon; SINE; 5S rRNA; polIII; Dr000031; Dr000339; Dr000397; SINE3-1 |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [2] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: SINE3-1, a novel class of SINE elements that utilize 5S rRNA. |
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Journal: Repbase Reports 2:(6) p. 22 (2002) |
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Abstract: This family represents a novel superfamily of SINE elements. Its 5' ~120-bp region is derived from 5S rRNA that encodes the polIII internal promoter. SINE3-1 elements are not flanked by target site duplications. 3'-termini of SINE3-1 elements are composed of minisatellites. Therefore, retrotransposition of SINE3-1 may depend on CR1-like non-LTR retrotransposons. About 10000 copies of SINE3-1 are expected to populate the zebrafish genome. They are ~90% identical with the consensus sequence. This family is composed of many minor subfamilies. Members of some young subfamilies are ~95% identical with each other. The SINE3-1 consensus sequence [2] replaces the unclassified Dr000031, Dr000339 and Dr000397 repeats [1].
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Derived: [2] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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