Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 29 |
REX1-1_DR |
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REX1-1_DR is a CR1-like non-LTR retrotransposon - a consensus. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: non-LTR retrotransposon; CR1 clade; REX1 subclade ORF2; AP endonuclease; reverse transcriptase; REX1-1_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: REX1-1_DR, a family of CR1-like non-LTR retrotransposons in zebrafish. |
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Journal: Repbase Reports 2:(5) p. 29 (2002) |
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Abstract: REX1-1_DR is a family of CR1-like non-LTR retrotransposons and it was active in zebrafish a few million years ago. The consensus sequence encodes one protein, REX1-1_DR1p (position 723-3311). The 863-aa REX1-1_DR1p protein is composed of the AP endonuclease (positions 1-200) and reverse transcriptase. REX1-1_DR copies are ~9% divergent from the consensus sequence. Approximately 1000 copies of REX1-1_DR are present in the zebrafish genome. REX1-1_DR1p: HGRLKAKLKLIPHRLSLPSIFLANVQSLVNKMDEIRLRINHSKRLWNCNVMIFTETWLNSGIPDNAVFLT EHNTFRADRTADDFDQRHCSANLEFLMVKCRPFYLPREFTFTIVTAAYIPPDADAKLVMNELPAISKQQT AHPEATFIVAEDFNHSNLKTVLPKIHQKDFCHKSGNKTLDHVHTNMAEAYVMNPPPPLGSIRSPFLFLTP KYSLLINRVKPSVRTIKVWPAGVDSTLQDRFQHTDWSIFASQANYGPYIDIISYTSSVLEYITTAIDSVT TQKQISTYPNQKPWMNKEVCLLLKARNTAFRSGDAQAYSTSRANLKRGIKKAKHCYKLKLEEHFSNSDPR CMWQGIQAISNYKPSQTTSTATNVSFLNELNDFYARFESDNKEAYTRITSSTDHSPITLTSSEVYTALSQ INVCKAAGPDGIPGHVLKACAEQLAGVFTDIFNLSLNLAAVPTCFKTTSIVPVPKHCSPTCLNDYRPVAL TPIIMKCFERLVLAHLKDSLPSTLDPHQFAYRGNRSTEDADSIALHSVLTHLDNKNIYARMLFVDFRSAF NTVIPSKLMIKLRDLDIDTSLCNWVMDFLTNRPQNVRSGHICSTTVTLNTGVPQGCVLSPFLYSLFTINC RPVNRSNTIIKFADDTTVIGLISNNDETAYREEIQHLATWCTDNNLLLNTNKTKELIVDFRKGRTGSHDP IHINGMAVEPVSSFKFLGTHISKDLSWTTNTSSLVKKAHQRLFFLRQLKKNQLSSAVLVNFYRCTIESIL TNCVTVWYGSCSVAERKALQRVVKTAQRITGTTLPAIEDIQKKHCLRRARSILKDTSHPAHRLFSLLLSG RRFRLPRTKTSRLRNSFFPRAPF
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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