Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 16 |
GYPSY3I_DR |
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GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: LTR retrotransposon; gag; endogenous retrovirus; pol; reverse transcriptase; Gypsy; GYPSY3LTR_DR; GYPSY3I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: The GYPSY3_DR LTR retrotransposon from zebrafish. |
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Journal: Repbase Reports 2:(5) p. 16 (2002) |
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Abstract: GYPSY3I_DR is an internal portion of the GYPSY3_DR LTR retrotransposon. GYPSY3_DR was active recently, it is flanked by 99% identical GYPSY3LTR_DR. Gag, called GYPSY3_DR1p, and pol, called GYPSY3_DR2p, are encoded by ORF1 and ORF2, which are slightly damaged by two false frame shifts. A conceptual translation of these proteins is shown here. GYPSY3_DR1p (300-aa, positions 18-1005): MNPETPGSQQLLATVAQHESTIQRHENAFAQQQTLMVQHSQLLADLMASVRQLFDKVHVDSTPAPAAASI PLPESRVISPMMEPRLPPPQRFSGDPSACDGFLXQCSLTFELQPSSFPSDRARIAYVITLLSGKALSWAT AVWKAKAPFCSNYKAFEQEFKRVFDHPISGRQASKRLLMLRQDTGSVAEYAIKFRTMAAGSGWNNEALMV CFQNGLSETIQDELATREPSLDLENLMEQAIRLDNRLRERYFNHPKPSFGVPTPAPTPTSQVSQFSAEPM QLGRTRLTPTERDRRMREQLCLYCGLSAHFRSTCPQLSGNAQSRTGQEGL GYPSY3_DR2p (1084-aa, positions 1047-4299): LFLPITLSWADQQSQFQAFVDSGAAGNFLDLTLAKTLNIPSEPLPDPLTVTALDGRPLAPGEVTHLTSQL CLSIYQHQERICFHLIHSPDFPVILGHPWLLQHNPYIDWPTSTVLGWSPTCQTTCLSQKSLQPSFESQEP LDLSRVPAQYHHLKAVFSKRRATVLPPHRPYDCAIDLLPGSCPPRGGIFSLSLPERTAMDLYIEESLAAG IIRPSTSPAGAGFFFVGKKDGGLRPCIDYRGLNKITIRNRYPLPLMSTAFEMLQGASIFTKLDLRNAYHL VRIRQGDEWKTAFNTPTGHYEYLVMPFVLTNAPAVFQALINDVLRDMLNKFVFVYLDDILIFSNSFQEHV QHVHKVLRHLLDNHLYIKPEKCQFHVSQVKFLVFVIEPEQIQMDPQKIQAVVDWPSPSSVKEVQRFLGFA NFYRKFILNFSTVAAPLFALTKGNMIRFRWGPEAEEAFKILKKQFTSAPVLLIPNADEPFTVEVDASEVG VGAVLSQRGEDKRLHPCAFLSHRLTPTERNNHVGDRELLAVKLALEEWRHWLEGAKHPFQVLTDHKNLEY IQQAKRLNPRQAHWSLFFNRFHFTLTYRPGSKNLKPDALSRVYVKSPQEDFIRPIVPSSKIVAPIRWELE GLIRKAQTKDPEPGGCPPNCLYVPRVVRSKVLMWGHSSQLTCHPGSARTLEFLQRRFWWPTIKEDVMAFV KACPTCNQNKSSHQPPQGFLHPLSIPHRPWSHISMDFITGLPPSQGNTTILVIVDRFSKAARFIPLSKLP TAKETAELVMNHVFRVFGIPQDIVSDRGPQFSSRFWQAFCQSLGTTTSLSSGFHPESNGQTERLNQDLET TPRCMTANNPTTLSQFIMWAEYAHNSLCSSATGMSPFECQFGYSPPLFPEQEVEVAVPSALQFVRRCRRT WKKARLKLLKVSQQYQHQANRRRRPAPNLRPGQRVWRNIPLRVDSRKLSQKFIGPFKIARKVNPVTYKLY FPKSLKINPTFHVSLLKPVLSSPFFVTGKPSPPRFVGGQAVYTVRRILDTRKVRKTRQYLVDWEGYGPEE RSWVLAKDILDPRLIRDFHALKMKSLGKNVRSRS
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Derived: Positions 61126 65446 Accession No AL591172 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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