Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 13 |
ERV2-I_DR |
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ERV2-I_DR is an internal portion of the ERV2_DR endogenous retrovirus. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: Endogenous retrovirus; LTR retrotransposon; gag; class I ERV; ERV2_DR; ERV2-LTR_DR; ERV2-I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: The ERV2_DR endogenous retrovirus from zebrafish. |
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Journal: Repbase Reports 2:(5) p. 13 (2002) |
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Abstract: ERV2-I_DR is an internal portion of the ERV2_DR endogenous retrovirus. It is flanked by 99% identical ERV2-LTR_DR. ERV2_DR belongs to the class I of endogenous retroviruses (4-bp TSD). It encodes ERV2p, a 455-aa gag-like protein that is closely related to this from ERV1_DR. The C-terminal portion of this protein includes the zinc knuckle motif present in gag proteins of many retroviruses. ERV2p (positions 718-2085): MFRQNTRLINTTEKGSLTTPSLSDQDFKSLLRQHMDSITESVRLNSTKKFSIDPDDVWTLDECKKVLDAC IRKNNVKVIICCYREFNLSRAKQQAQAKSELEKQIQELHAKITSLTKQLNLKKLKTDIEEVSQPDNKHPD LQIVSEKDISIQSDSDLPIGSVEVCGATRSKRTESSHNNTSVVQIQTVSRTLGPKEIDRLSQSLPSARTN FSEFSRALISKMRLYDMSLTEVTQLMSQILTESEFNSFEHTVTSKLQHASKDDLREGVLKALKNIVGPKI DWSKVTCCVQRKDESVNEFTERFCQSAITYSGLADNSDSVLDDKGPLVRIWSDGLAAEYRKALPFLNITW SSTTLRNNMNSLALWERDSYIKDRVRFEAAATKVNTEKTSNHKCLRKNICCHYCGKKGHWMRECRKNKKN FKEMNRVNQLLNSLLNALNIPLPSSLNPLSSPQRC ERV2-I_DR is 72% identical with ERV1-I_DR.
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Derived: Positions 31851 28761 Accession No AL591210 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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