Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 6 |
CR1-4_DR |
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CR1-4_DR is a CR1-like non-LTR retrotransposon - a consensus. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: non-LTR retrotransposon; CR1 clad; ORF2; reverse transcriptase; CR1-4_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: CR1-4_DR, a family of CR1-like non-LTR retrotransposons in zebrafish. |
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Journal: Repbase Reports 2:(5) p. 6 (2002) |
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Abstract: CR1-4_DR is a family of CR1-like non-LTR retrotransposons and it was active in zebrafish recently. CR1-4_DR copies are ~5% divergent from the consensus sequence. There are ~100 copies of CR1-4_DR present in the zebrafish genome. The 5' portion is incomplete; the consensus was built from five copies. The consensus encodes CR1-4_DRp, a 566-aa portion of the reverse transcriptase. CR1-4_DRp (positions 2-1696): XLCNSFLTFFETKIKNIHHQLHSNSSAPDFSQHVSEIITHFSFDTFTLPSTAEIVGHIRKSKTTNCLLDP LPTCLVKTCLPSLSTLITNIIHKSLDSGSVPSLFKTAVITPVLKNLELIHPIWPTTDQFPNLPFVSKILE KCVASQIHNYLSINNLFELFQSGFRPNHSTETALVRITNDLLLAADSGLLSILILLDLSAAFDMVLHEVL LNRLASLGISGTLLLWFKSYLEDRTQYVQIKDFKSRSQIVTTGVPQGSVLGPLLFIIYLLPLGHIFRKYN IQFHCYADNTQLYLSTKPSCSFPPSALSRCLAEIKIWLSANFLKLNSDKTEALLIGTKSVLDKADNFTID IDNSTIFPSVQVKSLGVILDSTLSFEGHINNITRTAYFHVRNITRLRPSLTTNNTAIFIHALVTSRLDYC NALLSGLPSKLLRQKLQLVQNHAARVISRTPSHEHVTPLLYQLHWLPVKYRIDFKILLLTFKALHNLAPQ YLTELLHIYTPSRTLRSANNFTLVPPRTRLSTMGDRSFSSMAPRLWNSLPLDLRSSDSLHTFKSRLKTHL FKQAFL There is only a ~60% identity between CR1-4_DR and other CR1-like elements from zebrafish.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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