Repbase Reports |
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| 2002, Volume 2, Issue 5 |
| May 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
CATCH2I_DR |
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Internal sequence of the CATCH2_DR endogenous retrovirus. |
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Submitted: 31-May-2002 |
Accepted: 31-May-2002 |
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Key Words: Endogenous retrovirus; LTR retrotransposon; BELL/CATCH superfamily; CATCH2_DRp polyprotein; gag; protease; reverse transcriptase; endonuclease; CATCH2_DR; CATCH2LTR_DR; CATCH2I_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: CATCH2, an endogenous zebrafish retrovirus from the BEL/CATCH superfamily. |
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Journal: Repbase Reports 2:(5) p. 2 (2002) |
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Abstract: CATCH2I_DR is an internal portion of the CATCH2_DR endogenous retrovirus, which belongs to the BEL/CATCH superfamily. It is flanked by 99% identical long terminal repeats, deposited in Repbase as CATCH2LTR_DR, and is characterized by 5-bp target site duplication. Usually, internal portions of retroviruses from the Bel/Catch superfamily carry one long ORF that encodes gag, reverse transcriptase and endonuclease domains. Presumably, a false frame shift splits an originally intact ORF in CATCH2I_DR into two ORFs.
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Derived: Positions 129172 134996 Accession No AL645822 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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