Repbase Reports |
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| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 23 |
PROTOP1_DR |
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PROTOP1_DR is a nonautonomous P-like DNA transposon - a consensus. |
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Submitted: 30-Apr-2002 |
Accepted: 30-Apr-2002 |
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Key Words: Nonautonomous DNA transposon; P superfamily; PROTOP1_DR |
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Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: PROTOP1_DR, a nonautonomous P-like DNA transposon from zebrafish. |
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Journal: Repbase Reports 2:(4) p. 23 (2002) |
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Abstract: The consensus sequence was reconstructed based on 10 copies present in sequenced DNA that represents ~1% of the genome. Approximately 1000 copies of PROTOP1_DR are expected to populate the complete zebrafish genome. PROTOP1_DR copies are 7% divergent from the consensus sequence. This element is characterized by 33-bp terminal inverted repeats and 7-bp targets site duplications. We classify this element as a nonautonomous DNA transposon from the P superfamily. PROTOP, PROTOP_A and PROTOP_B DNA transposons found previously in D. melanogaster are characterized also by 7-bp TSD and 30-bp TIRs similar to those in PROTOP1_DR.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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