Repbase Reports |
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| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 18 |
L1-1_DR |
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L1-1_DR is a non-LTR retrotransposon from the L1 clad. |
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Submitted: 30-Apr-2002 |
Accepted: 30-Apr-2002 |
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Key Words: Non-LTR retrotransposon; endonuclease; reverse transcriptase; L1 clad; L1-1_DR |
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Source: Danio rerio |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: L1-1_DR, a non-LTR L1-like retrotransposon from zebrafish. |
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Journal: Repbase Reports 2:(4) p. 18 (2002) |
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Abstract: This element is characterized by 12-bp target site duplications. It can be an active element. It encodes two proteins: 294-aa L1-1_DR1p (positions 172-1053) and L1-1_DR2p (positions 1665-5489). These proteins are most close to corresponding proteins encoded by other L1-like elements. L1-1_DR1p is a putative RNA/DNA binding protein, and L1-1_DR2p is composed of the AP endonuclease (aa positions 1-200) and reverse transcriptase domains. L1-1_DR2p: MAGKLRKYKYTGKTAANQEDANTPSMMSEPAEHTDILEIKAELISSIKTEITSLFQKELKTALSNEFEMV KAELQAVKSEIASNASAVRSDLEAIKTTVSDMERGLSSCSDDVTELQNTVRKLEKNVVTLQEKCLDMEGR MRRSNIRILNVAEDPGACTPASVSKLLKDTLKMDKDILIDRSHRTLQAKRADGKPRAIVAKLHYYQDCVE ILRRVRETGPLHHNGATIFIFPDYPPSVARARSAFNEVRKLLRGKDGVRYGILHPARLRITHNGTEKQFQ DAAEALTYVKNNIL L1-1_DR2p: MVKPHNVNASGICQVNLISWNVKSLNHPVKRGKVLSHLKQLNTDIAFLQETHLKTFDHFRLRGGWVGQLF HSTFHSKSRGTAILISKTVSFEASKIEADPAGRYIMVVGRLNNTPVVMVNVYAPNWDDSAFFTGLFSRIP NIDTHHLILGGDINCVLSPSLDRSSLKPMIPSRTTQVINQLLKTYGMIDVWRFQNPGCRGYSFYSPVHKT YSRIDYFFLDSELLPLVSECKYNAIVISDHAPLLITLDMPITSNNYRPWRFNTLLLSDVEFVKFISSEIR EYLVHNQTPGISSSLIWESLKAYLRGQIISYSARLKKKQHERLKKIENDIFKLDEILAHSSTPDMFRQRL ALQSEFNLLCTKQTENLLIKSRHKMYEHGEKIGKILAHQLRQQNAAHSIMSVNDNTGTKLTNPLEINHRF REYYSQLYTSESCKDESLFDSFFKKISLPTIDQEFALDMENPFSKDEFIRAVSSMQNGKSPGPDGFPSEF FKKFSGELAPILLSLYEESSVTGSLPETMNQAIISLIYKKDKNPSECSSYRPISLLNVDSKIFAKILAHR LEIVLPTIVSGDQTGFIKNRYSFYNIRRLLNILHHPTPSDVPEVLLSLDAEKAFDRVEWDYLFYTLKKFG FGTKFISWIKILYSSPMAAIRTNCHISPFFSLERGTRQGCPLSPLLFALVIEPLSIAIRNDINIKGIQRD NFEHKISLYADDTLLYISEPLTTLPQIMTLLTAFGKISGYKINMQKSELMPINNAGRKIIFTSLPFKITK DKFKYLGIWITNKYKHLYKVNFPPLIDSIKKDLERWNPLPLSLGGRINTIKMNILPRCLYLFQCIPVFLT KSFFLLLDKLISSFIWNGKNARIRKNILQRHRDHGGLSLPNIQQYYWAANIRAMLHWSNPSYDSGPNWLS LENTSNFSTSLHALLCSNFPTPEPLSKYSLNPVVKHSLKIWAQFRRSFALKGLSAYAPIARNHMFTPSTI DKTFDIWSMKGLKILKDMFIDGQFASFQQVKVKFQIPNSHFFRYLQLRSFVSSSMSHYPSLPPPSLLDSI MELSPYSKGLIGKIYSIINSHNLEPLVKLKRKWEVELEIELSEDMWQSVLDNIHSSSICLKHRVIQFKVV HRLHWSKVKLAKFKPNIDPNCSIEPATLSHMFWACSKLKKFWHLIFKFLSDALNTYVEPEAIISIFGITP QSLCFNKSKINVIAFATLLARRLILLKWKEKLPPTFKQWLMELLHHLTLEKIRYTFGGCTDMFFLTWQPV LDHVKKMDPSVILEE
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Derived: Positions 114238 120048 Accession No AL645691 GenBank |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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