Repbase Reports |
|---|
| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 8 |
CR1-3_DR |
|||
|---|---|---|---|
CR1-3_DR is a CR1-like non-LTR retrotransposon - a consensus. |
|||
|
Submitted: 30-Apr-2002 |
Accepted: 30-Apr-2002 |
||
|
Key Words: non-LTR retrotransposon; CR1 clad; ORF1; ORF2; AP endonuclease; reverse transcriptase; CR1-3_DR |
|||
|
Source: consensus |
Organism: Danio rerio |
Taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Actinopterygii; Neopterygii; Teleostei; Euteleostei; Ostariophysi; Cypriniformes; Cyprinoidea; Cyprinidae; Rasborinae; Danio |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: CR1-3_DR, a family of CR1-like non-LTR retrotransposons in zebrafish. |
|||
|
Journal: Repbase Reports 2:(4) p. 8 (2002) |
|||
Abstract: CR1-3_DR is a family of CR1-like non-LTR retrotransposons and it was active in zebrafish recently. The consensus sequence encodes two proteins, CR1-3_DR1p (position 254-1801) and CR1-3_DR2p (positions 1805-4717). The 971-aa CR1-3_DR2p protein is composed of AP endonuclease (aa positions 72-282) and reverse transcriptase (aa positions 543-788). The 516-aa CR1-3_DR1p protein is distantly related to proteins encoded by ORF1 in known CR1-like elements from chicken, pufferfish and turtle. CR1-3_DR copies are lesser than ~5% divergent from the consensus sequence. Approximately several hundred copies of CR1-3_DR are present in the zebrafish genome. CR1-3_DRp1: MALDHIDLESHCCTNCHKLLQKIAVLETKLLAIQPELPNYTGPVHRGASQHSAGKPYKSTPATVLRTEKQ IETVENQRELWHKQGARPKGTRGVRSQRSYAAALAFSTPNTARTQIQLQNRYEVLSNMGEESPNAVRQRS HDSAINSAWNRGSRPTRQRHSAPIATEIRTLIVGDSIIKNFRSRSTMTYCFPHATVSDVNKELENILRKH ETAKRIIIHVGKNDIRKEQSELLKRDFCKLLETVERLKIQPFISGPLPARGTNMFSRLLGLNAWLQKTCN KKGLNFIDNFNLFWNQRQLFTSDGLHPNKLGAKVLKDNILFSLHHPSAVYATELNCTHTPSKCPDDHRTS NQLLSGLVADESPKDRDNTTQPQQPPITDKLPSAPCTLSSTQADCDASEQHQVSALIDDPQENSQVNISQ QPETPDPQPLSPDTFSLSSCSPLLDFSKKMEELVCAGTKLSHSIAASPQLATKSQQATRPSLSPPRPTPR KGLRSLRQRQVPKNTSSLAGELKNCH CR1-3_DRp2: CVSGACLDNSVFIRCLQNKQEPSVSVAFSTQICVLLRDRKPKTLSDRIANHSNLVSIKCISETSVVKTTK TVKLALLNIRSLNNKSLLVNDFINTNCLDFMLLNETWLDDSCSAAVLNEAAPLNFDFLSVCRANRRGGGI AALFKDVYECKQVSFGDYLSFEYLSIALKGSPRILLIIIYRPPKYSPAFIEDFTELLSIVTSEYDYFSIA GDFNIHIDNPEINAVKELMTVFNTFDLTQHVQGPTHNRGHTLDLLITKGLHISSTVVKDVALSDHFCIFF DILITPAIKDRSVSVRKRCINENTSEQFMKAISLAPSISADSVDSLLDLFNSKIENVINDIAPVKVRKRT GKERVPWRNSRAVQMKKRQCRKAERMWRKTKLVVHYNIYKDSLQAFNVELKTARQTFFSNLINNNVNNAR TLFATVERLTNPPSRIPSELLSVSKCNEFANFFTDKINNIRKAISSSNQPSCVDIKQTQPQLEKSDIMSD FMAINGKILEEMVQIIKTSTCSLDTLPTSFFKTVFTCSEMDLLKVVNDSLLSGIFPNSLKTAVVKPLLKK SNLDNTLLSNYRPISNLPFIGKIIEKVVFNQVNKFLNFKGCLDNFQSGFRAHHSTESALIKIINDIRLNT DSGKITVLVLLDLSAAFDTVDHSILLDRLENWVGLSGTVLKWFRSYLEGRGYYVSIGDHRSRWTPMTCGV PQGSILAPLLFNLYMLPLSQIMRKNQISYHSYADDTQIYLALLPNDYSPIDTLCQCIDEIKNWMCQNFLQ LNKEKTEVIAFGNRDEVLKVNAYLGSKGQTTKNKVKNLGVTLESDLSFNSHVKAVSKSAYYHLKNIARIR FFVSSEDLEKLVHAFISSRVDYCNGLLTGLPKKTVRHLQLIQNAAARILTRTRKSEHITAVLRSLHWLPV TFRIDFKVLLLVYKSLNGQGPQYITDMLTEYKPNRSLRSLGSYKLEVPRVQSKQGESAFSH
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||