Repbase Reports |
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| 2002, Volume 2, Issue 4 |
| April 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
ATHAT10 |
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ATHAT10 is a hAT-like autonomous DNA transposon - a consensus. |
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Submitted: 30-Apr-2002 |
Accepted: 30-Apr-2002 |
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Key Words: Autonomous DNA transposon; hAT superfamily; ATHATN10; ATHAT10 |
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Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: ATHAT10, a hat-like autonomous DNA transposon from Arabidopsis thaliana |
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Journal: Repbase Reports 2:(4) p. 2 (2002) |
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Abstract: ATHAT10 is an ancient autonomous hAT-like DNA transposon. There are several copies of ATHAT10 present in the genome. They are ~95% identical with the consensus sequence. ATHAT10 has 12-bp terminal inverted repeats and encodes the ~670-aa ATHAT10p transposase (there is one false frame shift at position ~1350). The ATHATN10 DNA transposon is a nonautonomous derivative of ATHAT10. CDS join(884..2869) ATHAT10p: MSSDSFRSNIGTPIEDVHNSTPAINTQESATEEQANTSSGKQRLNASDIFKVHFRKEKIDGKMKACCNYC NKSFFWKSGSGYGSYRYHLVNNHPEKYGGETQNATSANLSNFHYSDKRNREELAKCVAVDHLSFSFGEKL GFNNYCQKALNPQAKRVPRTTLTRTLKSLYRKTKKRFRMFVFLPNNVSICSDIWSDQWQIHHYMGITSHW LDSDWIIQKRIIAFRVFYERHTSDNIFKLIKIILEEYNLTNKIFSISFDNASANTASIDELINNCSPILG GKYFHVRCICHVLNLCVQDGLLVSQNNLISPIKTALNYLWGHPQLMKKWFRFCKMHNVSPKRFSRDVPTR WNSTYDMLVDSIGYKDLLCSFIQQNCSSLTLWPTHWDDCNALLKLLKCFNDATFLLSGVYYHTSHLLLYE CVNIADVMHEHENNTVLSSCITSMRDKWLKYYREIPPLNLLASVFDPRTKFDGLYDYLVAYYDLLHLSDS INVPSIISNSRKDIENLYDEYYRLYEHLVPQGTESSLQNDMSSTSTLSLAERMRRRKRQRPSQGNNAELE KYLSTNFEFSDADAGNNFQIIHWWKSHQSQYPILAMIAKDVLSSPVSTVSVERAFSMGGQILDETRSRMS PDSLEAQACLDDWTRAGYRQQEFLRENEEELEDIDSDVSSTRSEDSD
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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