Repbase Reports |
|---|
| 2002, Volume 2, Issue 2 |
| February 28, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 2 |
ATCOPIA96_I |
|||
|---|---|---|---|
Internal portion of the ATCOPIA96 copia-like LTR-retrotransposon - a fossil. |
|||
|
Submitted: 28-Feb-2002 |
Accepted: 28-Feb-2002 |
||
|
Key Words: LTR-retrotransposon; COPIA superfamily; ATCOPIA96 family; internal portion; pol; reverse transcriptase; ATCOPIA96LTR; ATCOPIA96_I |
|||
|
Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: The ATCOPIA96 family of copia-like LTR-retrotransposons. |
|||
|
Journal: Repbase Reports 2:(2) p. 2 (2002) |
|||
Abstract: ATCOPIA96_I is an internal portion of the ATCOPIA96 copia-like LTR retrotransposon flanked by 5% divergent LTRs, ATCOPIA96LTR, and 5 bp-long TSDs (AAATA). ATCOPIA96 is one of ~100 families of copia-like LTR-retrotransposons, which were active in the A. thaliana genome during last 20 Myrs. ATCOPIA88 is the closest family to ATCOPIA96; there is only 72% identity between ATCOPIA88_I and ATCOPIA96_I. A few false stop-codons and frameshifts have damaged ORF which encoded originally an intact copia-like polyprotein.
|
|||
|
Derived: Positions 8778 13283 Accession No AC006219 GenBank |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||