Repbase Reports |
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| 2002, Volume 2, Issue 11 |
| November 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 25 |
TRANSIB1_AG |
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TRANSIB1_AG is a TRANSIB-like DNA transposon - a consensus sequence. |
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Submitted: 00- - 0 |
Accepted: 30-Nov-2002 |
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Key Words: DNA transposon; TRANSIB superfamily; transposase; TRANSIB1_AG |
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Source: Anopheles gambiae str. PEST |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: TRANSIB1_AG: a family of TRANSIB-like DNA transposons from African malaria mosquito. |
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Journal: Repbase Reports 2:(11) p.25 (2002) |
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Abstract: TRANSIB1_AG is a family of DNA transposons that belongs to the TRANSIB superfamily originally identified in Drosophila (see description of TRANSIB1-TRANSIB4 in drorep.ref). Members of this superfamily encode the TRANSIB-like DNA transposase and generate 5-bp target site duplications. The TRANSIB1_AG consensus sequence was reconstructed based on multiple alignment of several copies of this transposon identified in the sequenced portion of the genome. Given the ~2% divergence of these copies from the consensus sequence, transposition of TRANSIB1_AG occurred recently (in the last 1 Myr). TRANSIB1_AG has 9-bp terminal inverted repeats. The consensus sequence encodes a 708-aa TRANSIB1_AGp transposase (positions 1539-3665). TRANSIB1_AGp is 29% identical to the TRANSIB2p transposase encoded by TRANSIB2 from D. melanogaster. TRANSIB1_AGp: MIEILLFNDFFNCVQHAHLIFFPLIQNVTQITNRELVLQFNFQNSAKLNVENAFRFVCETLESSDIDEDA VKQKLNLLERRAKHLWKKTNSDRNKFDRANFAWLNTQFLCDFKREKITIIQSKKLFIELTNRQKRRRIAQ MSSSVKCESVDEALMFARKIATQQKNTYVVNALTNMINCSTPAMKSGEEALSFLIEGNFSKKQYCIIRKE CPSKFRSYMEILKAKKTCSPSAESLHVTESSVKVDLQSLVHMTTKSIVRMEKDKIFAYMDSRKLNHLKLI LLMAWGMDGSSGHSQYHQNYSNETADDSNVLITSLSPINLTVEGDSSNEIMWSNLTPQSVRFCRPISMIF AKENRDLVINKKSEIEAEIEALRPYLFETENREKSVIVEFRFVLSMIDGKILSYITQIPTSCCPICGSKP TEMQNVKYIDNGFQPSPGSLIHGISPLHCWIRVLECILHISYRLDFTKWKVTAHYREAYNNRKRIVLRDL FTKFGVKVDQVRAGSSGTSTTGNVCRRIFSNPKLASEALGVDEDLIRRFRNILIAINSERPFNAETISLY CKDTYYKFINLYSWYYIPATVHKILAHAGELILNTPVPLGSIGEECGEARHKIFRKDREYHARKCTRESN LVDVFMRAIHSSDPFISSLSLQNRVQRKMSDNYPEEVKLFFEFEQLNSNENVPPLEESFEDIMDTLDKMN EPLVQDMG The A. gambiae genome harbors several families of TRANSIB-like DNA transposons.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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