Repbase Reports |
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| 2002, Volume 2, Issue 11 |
| November 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 23 |
RTE-1_AG |
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RTE-1_AG is a RTE-like non-LTR retrotransposon - a consensus sequence. |
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Submitted: 00- - 0 |
Accepted: 30-Nov-2002 |
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Key Words: non-LTR retrotransposon; RTE clade; endonuclease; reverse transcriptase; AGRP1; RTE-1_AG |
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Source: Anopheles gambiae str. PEST |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
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| [3] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: RTE-1_AG, a family of RTE-like non-LTR retrotransposons from African malaria mosquito. |
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Journal: Repbase Reports 2:(11) p.23 (2002) |
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Abstract: RTE-1_AG is a family of RTE-like non-LTR retrotransposons. The RTE-1_AG consensus sequence was reconstructed based on multiple alignment of ~100 copies identified in the sequenced portion of the genome. Given the ~2% divergence of these copies from the consensus sequence, transposition of RTE-1_AG occurred less than 1 million years ago. The RTE-1_AG family is composed of several subfamilies. The consensus sequence encodes a 972-aa RTE-1_AGp protein (positions 373 3288), which is composed of the AP endonuclease and reverse transcriptase domains. The 3' terminus is composed of the TAAG microsatellite. RTE-1_AGp: MGSWNVRTLSEAGALKKLDDALATLSMDLVALQEIRWLGNGVHNRRGKHCYDIYYSCHDRHRVLGTGFAV GPRLKPAIMDFKAINDRLCTLRMRGKFFNISLINVHAPTEDKEEEEKDLFYGRLARIVDACPRHDLIIIL GDFNAKVGREPMYRQYTGCHSLHEHSNDNGSRLVQFAAANNLVVGSTKFARKKIHKITWAHPGGESFNQI DHVLISRRRQSSLLNVRTYRGANIDSDHYLVGLVIRCRIARPRANGGGENTQARLNTDSLRDIAVQQEFK TALEESLLPEDRYETTSERWNALKTKIINCARNILPPRRGNTKSGWFDDECRQVTERKNTAYRAMQQRHR TRACAEEYSRLRREEKRVHRSKKHALEEQNMRELEQTREAYGPTRKFYQAIAGHRNNVVPKVTCCRNKDG DLVSNQPEVLSRWAQYFDELLNDQFSEQLEAPLADNVMLLPPSIEETRKAIRRLKNNKAPGTDGIAAELV KNGGARLENEIHQIVTEVWDSESMPCDWNLGIIYPIYKKGDRLDCNNYRGITVLNTAYKIFSLILQDRLV PHVEEIVGNYQRGFRNGKSTTDQIFTMRQILEKMAEYKNDTYHLFIDFKAAYDSIARVKLYDAMSSFGIP AKLIRLVRMTMTNVTCQVRVDGKLSGPFATTKGLRQGDGLACLLFNLALERAIRDSRVETTGTIFYKSTQ ILAYADDIDIIGLRLSYVAEAYQGIEQAAENLGLQINEAKTKLMVATSADLPINNPNLRRRDVQIGERTF EVVPEFTYLGSKVSNDNSMEVELRARMLAANRSFYSLKKQFTSKNLSRRTKLGLYSTYIVPVLTYASETW TLSKSDEALLAAFERKMLRRILGPVCVEGQWRSRYNDELYEMYGDLTVVQRIKLARLRWAGHVVRMETDD PARKVFLGRPQGQRRRGRPKLRWQDGVEASAIKAGITDWQTKARDRERFRTLLRQAKTAKRL.
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Derived: [3] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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