Repbase Reports |
|---|
| 2002, Volume 2, Issue 11 |
| November 30, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 14 |
INVADER1-I_AG |
|||
|---|---|---|---|
INVADER1-I_AG, an internal portion of the INVADER1_AG Gypsy-like LTR retrotransposon - a consensus sequence. |
|||
|
Submitted: 00- - 0 |
Accepted: 30-Nov-2002 |
||
|
Key Words: LTR retrotransposon; endogenous retrovirus; Gypsy superfamily; INVADER group; gag; protease; reverse transcriptase; integrase; INVADER1_AG; INVADER1-LTR_AG; INVADER1-I_AG |
|||
|
Source: Anopheles gambiae str. PEST |
Organism: Anopheles gambiae str. PEST |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: INVADER1_AG: a family of Gypsy-like LTR retrotransposons from African malaria mosquito. |
|||
|
Journal: Repbase Reports 2:(11) p.14 (2002) |
|||
Abstract: INVADER1_AG is a member of Gypsy-like retroviruses that belong to the INVADER group originally identified in Drosophila (see description of INVADER1_DM in drorep.ref). Members of this group encode one long polyprotein composed of the gag, protease, reverse transcriptase and integrase domains. A similar 1363-aa polyprotein, called INVADER1_AGp is encoded by INVADER1-I_AG (positions 488-4576). INVADER1-I_AGp: MATVKQLCEDFTKIGLVRECERLGLETTGGKVEIANRIVKYRATVASGDNAGPSGSGHRAEPANATDDVE NYAGNQPYESCDDDSEEKADLDLPEEEHGDSFVAEDDDETEEDPFQTAVRISTPKRPQRVYAFRDVEDSI ETFGAEDGHDVRIWLAHLDSVSKSAGWNDEQKLIMLRKKMTGIARKFVSSLRNVQTYAILKKELIAEFAP FVRSSDVHRILANRKKETAETMREYVYEMQRIAAQIDLDEPSLCEYIVNGVTDDDFFKSLLYEAQTIRVL KEKLLNFEKVRMARKKKTTDKEENKRVLSSSSRVDKRAEQRCYNCGNKGHQARACAQTQGGPKCFSCREY GHKASECARNKSVVPAKINVTEESVGMVDVVLNKTSVKALFDSGSNQNLVTIGCYKRIEGSPLIDTSMWF QGFGGMRTKAIGMFTVDVTVDDNVFSGVRFFVVPNESMSYDAVLGRDSLNYFEVTMTTAGVKVRPYGSTD EMFSIVCDNEDNLDVSPRFSERVKAVISGYKPAGNVNSRVETKIILHDETPVRSSPRRFAPGEKAVLEKT IDEWLAAGIIRESESDFASPVTLARKKDGSLRVCVDYRELNRKMVKDCFPMRNIEDQIDRLKSARVFTTL DLKNSFFHVPVEKSSQRYTGFVTHTGQYEFLRTPFGLVNSPASFSRFVADVFREFIKSERVLVYVDDLII PSLDEESNFQTLKELLNVASENGVQFNWKKSQFLKDEVEYLGYVIRGGCYRIAPSKLRSVQLFPEPKNVK QLQRFLGLTSYFRKFIAGYATISKPLTSLLQKGVEFVFGEEERSSFDELKRCLVTDPVLKIYDESAETEL HTDASKYGYGAALMQKSDDDKFHPVAFMSQQTSNAEKNYSAYHLEVLAVVRAVEKFRVYLLGIKFKIVTD CAAFGHTLKSKELSARIARWALMLEEYEYEVVHRPGSSMKHVDALSRAPVMIVKSDPMIEAIRKMQQSDE RAKAIIELLKTQSFEDFVMCDGLLMKVVKGREVIVVPSGMQSDLIRRIHEKGHLGARKIEGIIEQEFYIP NASEKIKQTIECCVKCILAERKRGKVDGLLYPIAKGDVPLDTYHVDHLGPMDITEKRYKYLFVVVDAFSK FTWIYPTKTTNSFEVIQRLTTQSEVFGNPRRIISDKGAAFTSNDFKRYCEDQDIERVEVTTGVPRGNGQV ERVNQVIIAMLRKMSVNDPAKWYKHVANIQRWINSSPHQSIGVTPFEAMFGVPMRHEGDLRLGELMEEIR VAQHHDQREQTRAGARVSIEKAQEEQRRSYDLRARSATTYREGDLVVIKRTQFGPGRKYAAEYLGPYKVT SVRPHDRYDVEKINGEGPKVTSTASSHMKPYRF Positions of domains in INVADER1-I_AGp: gag: 1-350; protease: 360-540; reverse transcriptase: 550-1050; integrase: 1085-1363. INVADER1-I_AG is flanked by long terminal repeats, INVADER1-LTR_AG. Solo LTRs or proviral copies are flanked by 4-bp target site duplications. INVADER1_AG has been integrated into the mosquito genome during the last one million years. There is 99% identity of INVADER1-I_AG copies with the consensus sequence.
|
|||
|
Derived: [1] (Consensus) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||