Repbase Reports |
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| 2002, Volume 2, Issue 10 |
| October 31, 2002 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 1 |
BS3_DM |
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BS3_DM is a non-LTR retrotransposon - a partial consensus. |
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Submitted: 31-Oct-2002 |
Accepted: 31-Oct-2002 |
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Key Words: Non-LTR retrotransposon; ORF2; JOCKEY clade; reverse transcriptase; BS3_DM |
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Source: consensus |
Organism: Drosophila melanogaster |
Taxonomy: Eukaryota; Metazoa; Arthropoda; Tracheata; Hexapoda; Insecta; Pterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: BS3_DM, a family of Jockey-like non-LTR retrotransposons from D. melanogaster. |
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Journal: Repbase Reports 2:(10) p. 1 (2002) |
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Abstract: BS3_DM belongs to the JOCKEY clade of non-LTR retrotransposons. BS3_DM is a separate family. Members of this family are ~93% identical to the BS3_DM consensus sequence. Therefore, this family was active a few million years ago. BS3_DM is 75% identical to BS2. The sequence is incomplete, a ~2500-bp 5' terminal portion of BS3_DM is not reconstructed yet. There are ~30 copies of BS3_DM present in the sequenced portion of the D. melanogaster genome. The 539-aa C-terminal portion of reverse transcriptase, BS3_DM-orf2p, is encoded by the BS3_DM consensus sequence (positions 2-1618). BS3_DM-orf2p: IKRRCARKAPLADNSGAWCRTFIEQAEVFAVHLAERFQPLNLASPQDVDATHDQLSQALQMDLPMQPITP SEIADVIAKQNPKKAPGHDTTCNSTLRTLPRCAILYITLLFNAMVRLQYFPPQWKLGIISMIHKPGKPEK NPGSYRPISLLPSISKVFERLIAARMVRIMEAKGILPEHQFGFRAGHCTVEQLHRVVEQILSAFENKEYC NALFLDVREAFDRVWHSGILLKIKNTLPAPYFGLLRSYLEKRRFAVRFHSALSNEHNVAAGVPQGSVLGP LLYCLYSYDMPRPDVSLPGTSMLATFADDVCVTYRSCCEHDAADDIQDFASTFAEWAKRWNIGINGDKSA NVCYTLKRKTPPAVLIDGTPVPQSNSAKYLGVILDRRLNFSKQVSAMRVRIRAAASKHFWLINSRSKLSL SNKVTIYKQIIAPIWRYGCQIWGLACDSQIRRIQAAQNKIARMITGCEWYVRNTTLHKDLKLATVFEAIN MHSSRYHDRLERHRNRLAKALSRARPPRRLHRRQPKDLIIRSPLTRARR
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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