Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 17 |
ATMU11 |
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A molecular fossil of the ATMU11 autonomous DNA transposon. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: autonomous DNA transposon; MUDR superfamily; TIR; transposase; ATMU11 |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Plantae; Embryobionta; Magnoliophyta; Magnoliopsida; Dilleniidae; Capparales; Brassicaceae |
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Authors: Kapitonov,V. and Jurka,J. |
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Title: The ATMU11 family of MuDR-like transposons. |
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Journal: Repbase Reports 1:(4) p.17 (2001) |
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Abstract: ATMU11 is a fossil of an autonomous DNA transposon from the MuDR superfamily. ATMU11 is flanked by 90% identical ~240-bp TIRs. ATMU11 represents one of tens MuDR-like families present today in the A. thaliana genome. It is flanked by a 10-bp target site duplication. ATMU11 has preserved well the MuDr-like ATMU11p transposase. Presumably it was encoded originally by 4 exons. Exon 3 is currently damaged by a false stop codon at position 1848-1850. The stop codon is masked by X in the 743-aa ATMU11p protein sequence. CDS join (371..1237,1363..1590,1674..2648,2728..2889) ATMU11p: MTRRESKRKRPDEKEKRDVDPVREKNTESEAVSGDDCEVCGDEDCDDIRYDDEEDDRDEV NETEHRNRLGVDEQVCEDFVAEFGEAARDDEDVSDADSGDEIWDDERIPDPLSDSDNDED LVDGVARTEPEDLEELLKLGKTFSCPEDFKIAVLRYSLKTRYDIKLYRSQTLKIGAKCLD TDVKCQWRCYCSYDRKKHKMQIKVYESKHICVRSGYFKMLKRRTIAWLFSDRLRKNPKIT KHEMVDEIKREYNLVVSDEQCSKAKTKIMKERRAVHEDHFSRIWDYQAETCRPIIGVDGA FLNWDVKGHLLAATGRDGDNRLVPIAWAVVEIENDDNWDWFIRMLTTTLDLQDGSNVAII SDKQAGLVKAIHSILPNVEHRQCARHIMDNWKRNSHDMELQRMFWKIARSYTEGEYAANM EALXKYNPGAFSSLLRTHPMTWSRAFFRIGSCCNDNLNNLSESFKRTIRQARKKPLLDLL EDIRRQCMVRNEKRYVLAGRLKTRFTKRAHFEIEKMVEGSQFCIRWMARNNKHEISLNNV IYSVDMNDNTCGCRKWQMTGIPCVHAASVIIGKKQKVEDYVVDWYTTQRWQQTYKDGIAP VQGKILWPRVNRFGVLPPPWRRGNPGRPNNYARRKGRNEAASSSITTLSRLHRVMTCSNC KQEGHNKKGCKNQWVEGQPKRPRGRPKKASEPRNILFGQGLSHAFSGSQDQASQRSQSSQ TSHVSQRVPHGEGQGQGQGQYTY
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Derived: Positions 53477 57307 Accession No AC021666 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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