Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 12 |
ATHILA8A_I |
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ATHILA8A_I is an internal portion of the ATHILA8A endogenous retrovirus - a consensus sequence. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: Gypsy-like endogenous retrovirus; ATHILA superfamily; long terminal repeat; reverse transcriptase; integrase; ATHILA8ALTR; ATHILA6B_I; ATHILA8A_I |
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Source: consensus |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae; Arabidopsis |
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| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
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Title: ATHILA8A, an ancient family of Athila-like retroviruses. |
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Journal: Repbase Reports 1:(4) p.12 (2001) |
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Abstract: ATHILA8A_I is an internal portion of the nonautonomous ATHILA8A endogenous retrovirus. There are ~10 copies of ATHILA8A_I in the genome; they are ~91% identical to the consensus sequence. The consensus sequence was derived from 9 proviral copies. The internal portion is flanked by ~90% identical LTRs (ATHILA8ALTR). Given the divergency of the flanking LTRs, ATHILA8A is older than ATHILA1-7 retrotransposons. Second half of ATHILA8A_I (positions 2600-5635) is ~60% identical to the internal portions of ATHILA4, ATHILA4A and ATHILA4C, including part of the Athila-like ORF1. The first half of ATHILA8A_I encodes a protein, ATHILA8A1p, which is not similar to any retroviral proteins or proteins encoded by other ATHILA-like elements. ATHILA8p1 MNSRNYPNSYYPNVNHGSNRGSHFSTGHYTPDASQMHGESWQSWSSNGGAYRTDHYSNDQSATFVQNRPQ ANRSVSPFHHCVPSPRDQRVGGPHSSHPYGVARHEDFGYDQGYLQEVMSVDVHPNNYAYQTNEPYQTAEL EDKLIGLLQDFVDDHQEDVKRIDSKMTEMKAKFEEKFDDLTNRLENMEGALVEINNTLLNHQDDIQDQNT RIVNVGFAVDTVESHLDWKIEELEKKLTNSNEFSEWRSNQSCQEEDEFPKAQARYEEETKKEIGFLVEKG KDLISYSEKGNLDPIKSLGISIPFVSPQDQIEQEEDLEEEEAVSFEEDSMAEHNSREESLETEKEEVCLE SQENRFEELSEESDELTNFSSEEGEDEELKDVHSCMAIRLPSGGIPANPSFGQLGSLEEANPRGSLGAIQ ANRPFHVGEDLDAARRAQPSRFRTPYPRRAEESYPAQHYRPPVLPMLSTRDRSHMPWKHKTHEERLEILV SQFLDQQALDTRKLNARIDDIEVTLLSKVDALFVKFKKSEGSRVKEAEANEERFKKIEEEQERHLKSAQD NAINTRALLRQISNSDKDYDAKIEALSDKDANLVSRLGKLEDHLYEEQRRVDDLSYQQNRFHETLSERTI LAAGNDELDPRDKREWSPCSGKDFSSISQDDLRRIQSRMEGVDESIWRLQTRINQLEDNDAKEDVALEDV IRRQGEVEENQVKNVDDQSKIRASLRRVTMESSRKYVELLDRILDLDKKVDNLSTRIEGHEPMESEEEDS SPHVLCDAVTTYQEPHDLEEGEIDERDEDPPGRTSVYNRLTLLEDRWH ATHILA8A is most closely related to ATHILA8B which encoded a complete ORF1-like protein, instead of ATHILA8A1p in ATHILA8A.
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Derived: [1] (Consensus) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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