Repbase Reports |
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| 2001, Volume 1, Issue 4 |
| April 30, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 8 |
ATHILA7A_I |
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ATHILA7A_I is an internal portion of ATHILA7A endogenous retrovirus. |
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Submitted: 30-Apr-2001 |
Accepted: 30-Apr-2001 |
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Key Words: Gypsy-like endogenous retrovirus; Athila superfamily; internal portion; ORF1; pol; reverse transcriptase; ATHILA7LTR; ATHILA7A_I |
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Source: thale cress |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryotae; mitochondrial eukaryotes; Viridiplantae; Charophyta/Embryophyta group; Embryophyta; Magnoliophyta; Magnoliopsida; Capparales; Brassicaceae; Arabidopsis |
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| [1] |
Authors: Kapitonov,V. and Jurka,J. |
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Title: The ATHILA7A subfamily. |
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Journal: Repbase Reports 1:(4) p.8 (2001) |
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Abstract: ATHILA7A_I is an internal portion of ATHILA7A endogenous retrovirus. It belongs to the gypsy superfamily and is related to the ATHILA-like endogenous retroviruses. ATHILA7A is a subfamily of the ATHILA7 family. ATHILA7A_I and ATHILA7_I share ~95% identical 1.6 kb 5'- and ~2 kb 3'-terminal portions. There are two well preserved copies of ATHILA7A_I present in the A. thaliana genome; they are 96% identical to each other and are flanked by the 2% divergent ATHILA7LTR long terminal repeats. ATHILA7A_I encodes well preserved remnants of a protein similar to the ATHILA ORF1 protein (it is present also in other ATHILA-like retroviruses that populate the O. sativa, H. vulgare and V. faba genomes). The protein, ATHILA7Ap, is 930-aa. One false stop codon present in the copy deposited in Repbase Update is corrected based on the second ATHILA7A copy and other ATHILA ORF1-like proteins deposited in GenBank. ATHILA7Ap: MNEPEVGGHNGNGQANGGGHMPQHQPRAHQPIGAFDEPNIRGNRNGIQAPPVENNNFEIKSSLINMVQSS KFHCLSMEDPLDHLDQFDMLCSTVKINGISEDAFKLRLFPFSLGDRARIWEKNLPQGSITSWDQCKRAFL LKFFSTTRTARLRNEISSFTQRSNKSFCEAWERFKGYKMQCPHHGFSKESILSTLYRGVLPKFRMLLDTA SNANFLGQDIDDGLSLVENLAQSDGNYGEDYDRTPRESNEMSNLHRKEIKALNEKIDKMILANQKPIHFV SESDVYQGYQEHMEGCVERQEEVNYAIGQGYNKFNLNYRNHPNLSYRSNNVENPQDQSYPPLKPPGFTQQ PNYQPQPQRNFQPKPQAYHHNQHQGSSSNPPPQADTNALLRQILEGQGRGAIDLATQMKGMHTKVDDIYG ELNAKIERLNVHVYSPSSSTSKHPMGTLKGKSETNHKEFCNAIFINDFDMVENMSYTQSREDGRIDENEK AIEEISKLLYGSNVENLMVASDEKAKKSTNGNDMITKSVEKKEASRVEPLPYEPLLPFPGRVLTKAKKKV FSSFKANMSRVGAPLPCVENLSQIPLHFKFIQAILENREKVEEIMRAFDSPITPQTEPKSIIKLEDPGKF TIPCSLGDLQLDDALCDSGASVNVMSLEMVKSLGVKDMNHHTSSIMFGDASSTTPLGLIEDYPLKVGDCI VPTDFMIVEMKDTHKVPLILGTPFLNTVGANIDFPNKRVTLLHVNGNVSYPIKPFSTKFCGTITNEEVKT KKEPKSLKDQLEIKVVNAKNREDFTVDEKILDGECLHFLFDAQEESTKKKELGKAKMVLEKNKRMMKRTH PPTLDNSPNPTSSMTLTLLRYNDGILEYRVKCKGRSNPFSSVKAILTPEFKEKGSKSVEELMKEVLTLAF KGSTRSFTTPPITSLPKVHN
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Derived: Positions 72809 68056 Accession No AC005965 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References:
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