Repbase Reports |
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| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 26 |
ATCOPIA91_I |
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Internal region of the ATCOPIA91 copia-like LTR-retrotransposon. |
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Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA91 family; ATCOPIA91LTR; ATCOPIA91_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA91 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(3) p. 26 (2001) |
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Abstract: ATCOPIA91_I is an internal region of the ATCOPIA91 copia-like endogenous retrovirus flanked by the 93% identical ATCOPIA91LTR long terminal repeats and a 5-bp target-site duplication (TTTTT). ATCOPIA91 forms a separate family of copia-like retroviruses present in the A. thaliana genome since members of other families are less than 75% identical to ATCOPIA91_I. ATCOPIA91_I (positions 357-4973) encodes remnants of the ~1540-aa ATCOPIA91p copia-like polyprotein. The ORF which encodes ATCOPIA91p is damaged by two indels that produce false frame shifts at positions 735 and 2162 (marked by Xs in the ATCOPIA91p sequence). ATCOPIA91p: MTTSSNTNVDSSRQSIDQYENPFFLHSSDHAGLVLVFDRLTTGADFHSWRRSVRMTLNVRNKLGFIDGNI TKPSPDHHDFGSWSRCNDMVATWLMNSVCKKIGQSLLFISTAEGIWKNLLARFKQDXXAPRVYEIEQRLS IIQQGAMDVSSYYTELVTLWEEYRNYVELPVCTCGRSECNAAVLWERLQQRSRVTKFLMGLNESFESTRR QILMLKPIPTIEDAFNMVTQDERQRSIKTPSSKTVVFQASGPNQSSGQCYQDVSSYQGQMDNTAFAVQNE YRPRPPRPVCTQCGQSGHVVQKCFKIIGYPPGYIPRFKSTISNYQSQRSPAPSTFQPRGYSANAASKPHS VANIMTNPPSLYIPPPATEVNNLDINKLSGDQIQTLIQQLSGRIQTSEPLAPSPSTSAPSTVTEHGIMAV QSSAGTIPFPSSSLRFENDQLTFQHQCLSSLYTNLPHGSWIIDSGATTHVCSDLAMFNETNTVFGVTVSL PNDTRVQITHTGTIPLSHSLILQDVLHVPSFKFNLISVSSLLKTNHCSSHYYVDSCIIQEFIQGLTIGRG ILLHNLYILRLDAPSTHDQFAGSLVVDGILWHQRLGHPFADKLKCIXMHRISGTLSSSKSSFMHPFHCSI CHLAKQKRLSYESHNHLSSLSFDLVHLDVWGPFSIESLEGYKYFLTIVDDCTRVTWVYMMRNKSEVTQHF SDFIKHVLTQYKAVIKMIRTDNAPELAFKSIVKEHGMVHQFSCAYTPQQNSVVERKHQHLLNVARSLLFQ SNVPIAYWSDCLLTVVFLINRIPSVLLKNVSPYELLTKRKPAYDFLRSFGCLCYVSTLQKDRNKFSPRSE KCIFLGYSSSYKGYKVLHIDLNCVSVSRNVVFHENIFPFHDNPISPVSDVFSHAILPLPIHVNDEIHTSS SPNAHNEHSHASSASSSSTTSSQPSTSSSSIIPVLPEAVTTETACVSLSVARPKRQGKAPSYLSDYHCSF TQISEPSPQNSFPHLKVYSTPYLISSVLSYSSLKSPFQSFVLSYSAETEPKTFKQAIISVQWTKAMDEEL GAMELNKTWSVVSLPPGKNVIGCKWVYTIKYNPDGTIERYKARLVAKEFTQQEGVDYFDTFSHVAKLASV KLVLGCAAKKGWSLTQIDVSNAFLHSELDEEIYMSLPQGYTPSSGFLPSHHVCRLHKSIYGLKQTSRQWY KCLSKTLLDAAFIQSQSDNTLFVQLQGTSFIAILVYVDDILIASNDSNQVTLIKAYMADHFKIKDLGPAR FFLGLEIARNSEGIAICQRKYCLDLLTDAGLLGCKPSTVPMDPKVNLTADMGTLLDNAKPYRKLVGRLLY LCVTRPDITFAVHRLSRFLSCDTDVHMQAAQRVLKYLKGNPGQGLFYSTNTSLCLNGFADADWGTCLDSR RSVSGVCIFLGTFLISWKYKKQDVCSSSSTEAEYRSMAVATKDLLWFSYMLKDLHIKVETKAKLFCDNKS AMHIANNPVFHERTKHVEIDCHTTRDQMKFGFLQVHHIGTENQLADILTKPLHPGPFKSLLNRLGVSNLF LPKE
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Derived: Positions 28125 23138 Accession No AB026643 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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