Repbase Reports |
|---|
| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 22 |
ATCOPIA89_I |
|||
|---|---|---|---|
Internal region of the ATCOPIA89 copia-like LTR-retrotransposon. |
|||
|
Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
||
|
Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA89 family; ATCOPIA89LTR; ATCOPIA89_I |
|||
|
Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
|
| [1] |
Authors: Kapitonov,V.V. and Jurka,J. |
||
|
Title: Internal portion of the ATCOPIA89 copia-like LTR-retrotransposon. |
|||
|
Journal: Repbase Reports 1:(3) p. 22 (2001) |
|||
Abstract: ATCOPIA89_I is an internal region of the ATCOPIA89 copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA89LTR long terminal repeats. and a 5-bp target-site duplication (AACAT). ATCOPIA89 forms a separate family of copia-like retroviruses present in the A. thaliana genome since members of other families are less than 75% identical to ATCOPIA89_I and ATCOPIA89LTR. ATCOPIA89_I (positions 91-4566) encodes remnants of the 1492-aa ATCOPIA89p copia-like polyprotein. The ORF which encodes ATCOPIA89p is damaged by one false stop codon at position 1690-1692 (marked by X in the ATCOPIA89p sequence). ATCOPIA89p: MGVPVRKSTRRLGRSVGAGSSGTKLKAPMSSNSPDPAPVVPIRSISEIDAVDSPHSPFFLHSADHPGLTL VADRLDGTNYTQWSSAMKISLDAKNKIAFIDGSLPRPAEGTPLSRIWSRCNSMVKSWLLNAVSKQIYGSI LNLDDATMIWNDLHDRFHMTNLPRTFHPIQQIQDLRQGSMDLSSYYTALKTLWDQLDGSEPTESCLCCHS FNCVSKRHYRGKVDRGRIIKFLAGLNETYSIIRGQIIMKKPLPDIAEVYHILDQDDSQRKFGNSIVPAAF QVGIAGSHPGVVNADASSPSAGSLIAAYQSFKKDKPTCSYCGFTGHVVDRCYKKHGYPPGWKPRKQQVNA SPTPQSSSPAITAQVSATVGSGDKQDGGLDSLIGNLSKEQLQHFIAYFSSHLTTQFPASVPLNEASTSGI SFSPSTYSFIGILTVTQSVTNKRSWIIDSGATHHVSHDKSLFSDLDASVSQHVNLPNGSVVMVAGVGTVI INTSISLKNVLYIPDFRMNLLSISSLTTDLGSRVIFDPASCLIXDPTKGLTIGRGRRIANLYLLDVEEPA DSRQLSSYSLNDVIDSAVWHKRLGHTSFSRIDMLTDVLGISKQRNKGVIHCDICQRAKQKKLSYPNRNNL CSASFDLLHIDVWGPFSEPTVEGFRYFLTIVDDHTRVTWVYLLRLKSDVLTVFPEFLQMVETQFDKRVRC VRSDNAPELKFTELYRRLGIIPYHSCPETPEQNSVVERKHQHILNVARALLFQSNLPLSLWGDCILTAVF LINRTPSPLLENKTPFEKLTNTTPEYTDLRTFGCLCYASTSPKQRTKFEDRAKACVFLGYPAGYKGYKLM DIESNVVFISRNVKFFEDIFLFQNSQASDEVDVTGFFPQISTRVADPGESSGTRTEGEYSSTMRQGESNS ESVIPNTEDTSRRRVSRPPGYLQDYQCYSVKESVKESTEHPISQVFSTDNLSSSYCAYINALTKYPTPTS YTQASKVKEFCDAIKDEIGALERTNTWIVCAIPPGKTVVGCKWIYTIKLNADGSLERYKARLVAKGYTQK EGLDYVETFSPVARMATVKFLLSVAAPRKWFLDQLDISNAFLNGDLHEEIFMALLPGYVDKDGKPFPPNS VCKLQKSLYGLKQASRQWFLKLSHCLMSMGFRNGTGDDTLFLRRTDDTYMAILVYVDDIIIASSSSTATA SFTAALKESFKLRDLGPLKYFLGLEVARTSAGISICQRKYVLDLLDETGLLGCKPSSIPMDPSQKLNLET GDLLTDVEMYRRLVGKLMYLTFTRPDITFAVHKLCQFTSAPRQPHLTAVYKVLHYLKGTIGQGMFYSANS DLKLKSFSDADWGTCTDSRISVTGFCMFLGPSLVSWKSNKQETVSMSSAESEYKAMSTAVKEMLWLRKLM NDLWIDASEASVLYCDNTAAIHIANNSVFHERTKYLDLACHLVRERVLMGQIKTLHVQTEHQLADALTKP LYPTLFLRLIRKMGVINIYTPS
|
|||
|
Derived: Positions 74828 70253 Accession No AC068809 GenBank (rel. 124.0) |
|||
|
Download Sequence - Format: IG, EMBL, FASTA |
|||
|
References: |
|||