Repbase Reports |
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| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 18 |
ATCOPIA87_I |
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Internal region of the ATCOPIA87 copia-like LTR-retrotransposon. |
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Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA87 family; ATCOPIA87LTR; ATCOPIA87_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA87 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(3) p. 18 (2001) |
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Abstract: ATCOPIA87_I is an internal region of the ATCOPIA87 copia-like endogenous retrovirus flanked by the 99% identical ATCOPIA87LTR long terminal repeats, and a 5-bp target-site duplication (TAGAC). ATCOPIA87 forms a young family of copia-like endogenous retroviruses present today in the A. thaliana genome. ATCOPIA87_I encodes well preserved remnants of the 1338-aa ATCOPIA87p copia-like polyprotein. ATCOPIA87p: MVSELQVKEETSQEPRFERFDGRGDYTLWKRKLLAQLEVMGISDALKEKEEKKEAVETERVKVVSSSSER RREEHKKDHSREEKENKARSVIILSVADNILRRIRTEETAAGMISVLDKLYLSDPLSSRISLKRKLFEFK MSENKAVEENIEDFFRIVEDLEKLDVYVSDEDKAFMLLLSLPRKLEQLKYSLDYCEEPLTLGRVMTAIYK KELEVAQIERQTEEEEKRLSLRERERSDYREEQAKGKEKVRSEAREKKGPCWRCGQKGHVKTECFQEKKN KSRKKSVRYEESSAQSIVSGGSVFMVSEAAARASKGSSEEWICDTGCTSHMSSRKEWFEDLVFSESGNVS MANDTTLQVKGIGSVRILNDDGTTVLLTNVMYIPGMSKNLISLGTLENKGCWFKSKNGILKVIKGCITLM KAEKVGTLYMLKGKAVTARRRAVQGPKEETKMEHIKPAHMSQTSLEIPVKKGCIRKQKIGEVKVCEDRAQ KEVKRIKFDSEKIVTEMKPKIVHSKIWSFASTPRKIKEGLRIKGITAKETGKSVCDTILLKSCTGGVDIA VNLKKSLFSSSFEVSRDKETSSASNCRKLVISQDEKFQRDIICECCQEHECERRKCVSEKGIFSLHDKNE LVYNESVIQGGASSSENSQQHSSLNSHQVMATFMRSRKEEMAKDGTYHHSTSHQVSMKRSGVTVYAPSSQ RKPSPRERNIISVGCYDGEIFFKILLPEDKEDCFIRKNAEFLEGYLIKVLNLKFQDLEDQRRKSVRVSLK SLQDYETSSFQVQGGAYSAKGSFISEGQESLNTSLQGRDAASETSEEETDLQGYLLTRINVKREVQPSKK DEETKLVGSVQFIIEDAGKTEPTSFEEEKRDPSWSKVEEIQFLHNRDTWDLADKLMNQEASICKGIYKKK PEFSGIGKPSFKVNLRVKGHSKEKVVLKLMEMKQKTDFLHENSEKNIRMLQPAVYEEKSRKEKAFLLENF LYGLKNLPRSQNQRNDTLLIQDGYMRSKYVLWVYFKVSKMEIHQNRGFESPRLSQEAYVIKVIRLFKEDQ CEFVFTSSETLFEFQALEEEKQGDQADYMKLISCLSDVDSVVVAIIGTRVNIAWFRGVVFRSKKEHWKSM LRRMRGIKGTTESVQVHRKQEDFELTRVNDSKVAVGADQKRVLTCRSFTTAGSSISCKYMFQEVDFVSTK KGERNRWTGAYKRVVWVRDFKDLIESSLVFKKQEESMLRGCYSSKFAAGSVLKVNFQQCVFSFAGNTLRR ESGLLKVGVSSTTEAEKRVQEMDIQETVLSRELLDMDTGGLKKTTKLGMLSSAAGVVTKGLTRSMFQDGG PMLRFTKN
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Derived: Positions 25401 29487 Accession No AB028606 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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