Repbase Reports |
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| 2001, Volume 1, Issue 3 |
| March 31, 2001 |
| Copyright © 2001-2016 - Genetic Information Research Institute |
| ISSN# 1534-830X |
| Page 14 |
ATCOPIA85_I |
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Internal region of the ATCOPIA85 copia-like LTR-retrotransposon - a partial copy. |
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Submitted: 31-Mar-2001 |
Accepted: 31-Mar-2001 |
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Key Words: LTR-retrotransposon; COPIA superfamily; internal region; copia-like polyprotein; reverse transcriptase; the ATCOPIA85 family; ATCOPIA85LTR; ATCOPIA85_I |
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Source: Arabidopsis thaliana |
Organism: Arabidopsis thaliana |
Taxonomy: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; euphyllophytes; Spermatophyta; Magnoliophyta; eudicotyledons; Rosidae; Capparales; Brassicaceae; Arabidopsis |
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Authors: Kapitonov,V.V. and Jurka,J. |
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Title: Internal portion of the ATCOPIA85 copia-like LTR-retrotransposon. |
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Journal: Repbase Reports 1:(3) p. 14 (2001) |
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Abstract: ATCOPIA85_I is an internal region of the ATCOPIA85 copia-like endogenous retrovirus. ATCOPIA85 forms a separate family of copia-like retroviruses present in the A. thaliana genome. The only proviral copy is without the 5' LTR; approximately 1 kb of the internal portion is also lost. The 3' LTR is in place, we identified it based on a 95% identity to its copy present in AC023279. ATCOPIA85_I encodes remnants of the ATCOPIA85p copia-like polyprotein. The ORF which encodes ATCOPIA85p does not have false stop codons. Therefore, ATCOPIA85 is a young retrovirus.
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Derived: Positions 19551 23172 Accession No AB025622 GenBank (rel. 124.0) |
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Download Sequence - Format: IG, EMBL, FASTA |
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References: |
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